Analysis of interatomic Contacts of Structural Units in PDB entry:
8A8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A8C entry

There are 2 chains in PDB entry 8A8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20PHE 714
B
 SER 41HIS 641
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8A8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 27Right-handed alpha
Helix 2
AA2
A
44 46Right-handed 310
Helix 3
AA3
A
55 62Right-handed alpha
Helix 4
AA4
A
65 70Right-handed alpha
Helix 5
AA5
A
71 73Right-handed 310
Helix 6
AA6
A
122 124Right-handed 310
Helix 7
AA7
A
136 141Right-handed alpha
Helix 8
AA8
A
326 331Right-handed alpha
Helix 9
AA9
B
68 77Right-handed alpha
Helix 10
AB1
B
146 151Right-handed alpha
Helix 11
AB2
B
152 154Right-handed 310
Helix 12
AB3
B
173 175Right-handed 310
Helix 13
AB4
B
176 183Right-handed alpha
Helix 14
AB5
B
205 207Right-handed 310
Helix 15
AB6
B
291 295Right-handed 310
Helix 16
AB7
B
507 511Right-handed 310
Helix 17
AB8
B
587 591Right-handed 310
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There are 16 sheets in PDB entry 8A8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
41 42anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
126 133anti-parallel
Strand 3
A
147 153anti-parallel
Strand 4
A
104 105parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
91 92anti-parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
340 367anti-parallel
Strand 3
A
294 317anti-parallel
Strand 4
A
274 291anti-parallel
Strand 5
A
227 238anti-parallel
Strand 6
A
209 221anti-parallel
Strand 7
A
190 202anti-parallel
Strand 8
A
173 183anti-parallel
Strand 9
A
161 169anti-parallel
Strand 10
A
705 712anti-parallel
Strand 11
A
675 681anti-parallel
Strand 12
A
664 665anti-parallel
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There are 16 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
340 367anti-parallel
Strand 3
A
370 392anti-parallel
Strand 4
A
420 442anti-parallel
Strand 5
A
445 462anti-parallel
Strand 6
A
468 484anti-parallel
Strand 7
A
490 499anti-parallel
Strand 8
A
518 527anti-parallel
Strand 9
A
536 551anti-parallel
Strand 10
A
559 576anti-parallel
Strand 11
A
583 597anti-parallel
Strand 12
A
612 621anti-parallel
Strand 13
A
631 639anti-parallel
Strand 14
A
655 661anti-parallel
Strand 15
A
675 681anti-parallel
Strand 16
A
664 665anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
642 643first strand
Strand 2
A
651 652anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
689 692first strand
Strand 2
A
698 700anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 327first strand
Strand 2
B
308 320anti-parallel
Strand 3
B
81 89anti-parallel
Strand 4
B
94 96anti-parallel
Strand 5
B
375 382parallel
Strand 6
B
418 426anti-parallel
Strand 7
B
357 361anti-parallel
Strand 8
B
44 52anti-parallel
Strand 9
B
308 320anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 66first strand
Strand 2
B
219 223anti-parallel
Strand 3
B
135 139anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 113first strand
Strand 2
B
117 129anti-parallel
Strand 3
B
100 103anti-parallel
Strand 4
B
556 561parallel
Strand 5
B
600 605anti-parallel
Strand 6
B
611 617anti-parallel
Strand 7
B
478 483anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 258first strand
Strand 2
B
267 275anti-parallel
Strand 3
B
158 167anti-parallel
Strand 4
B
117 129anti-parallel
Strand 5
B
107 109anti-parallel
Strand 6
B
564 568parallel
Strand 7
B
593 597anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 203first strand
Strand 2
B
536 537parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 231first strand
Strand 2
B
298 300anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 246first strand
Strand 2
B
282 283anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
459 468first strand
Strand 2
B
632 639anti-parallel
Strand 3
B
496 503anti-parallel
Strand 4
B
546 550anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
471 474first strand
Strand 2
B
625 628anti-parallel
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