Analysis of interatomic Contacts of Structural Units in PDB entry:
8A8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A8D entry

There are 2 chains in PDB entry 8A8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2ASP 381
B
 SER 3GLU 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8A8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 26Right-handed alpha
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
36 48Right-handed alpha
Helix 4
AA4
A
59 70Right-handed alpha
Helix 5
AA5
A
120 130Right-handed alpha
Helix 6
AA6
A
136 144Right-handed alpha
Helix 7
AA7
A
164 168Right-handed 310
Helix 8
AA8
A
170 181Right-handed alpha
Helix 9
AA9
A
196 208Right-handed alpha
Helix 10
AB1
A
228 244Right-handed alpha
Helix 11
AB2
A
262 277Right-handed alpha
Helix 12
AB3
A
297 302Right-handed alpha
Helix 13
AB4
A
303 306Right-handed 310
Helix 14
AB5
A
330 334Right-handed 310
Helix 15
AB6
A
337 339Right-handed 310
Helix 16
AB7
A
345 355Right-handed alpha
Helix 17
AB8
A
365 374Right-handed alpha
Helix 18
AB9
B
16 26Right-handed alpha
Helix 19
AC1
B
27 30Right-handed 310
Helix 20
AC2
B
36 48Right-handed alpha
Helix 21
AC3
B
59 70Right-handed alpha
Helix 22
AC4
B
120 130Right-handed alpha
Helix 23
AC5
B
136 144Right-handed alpha
Helix 24
AC6
B
164 168Right-handed 310
Helix 25
AC7
B
170 181Right-handed alpha
Helix 26
AC8
B
196 208Right-handed alpha
Helix 27
AC9
B
228 244Right-handed alpha
Helix 28
AD1
B
262 277Right-handed alpha
Helix 29
AD2
B
297 302Right-handed alpha
Helix 30
AD3
B
303 306Right-handed 310
Helix 31
AD4
B
330 334Right-handed 310
Helix 32
AD5
B
337 339Right-handed 310
Helix 33
AD6
B
345 355Right-handed alpha
Helix 34
AD7
B
365 374Right-handed alpha
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There are 10 sheets in PDB entry 8A8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
98 103parallel
Strand 3
A
106 112anti-parallel
Strand 4
A
148 156anti-parallel
Strand 5
A
84 86anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
148 156anti-parallel
Strand 3
A
115 117anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
212 219parallel
Strand 3
A
254 255parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
212 219parallel
Strand 3
A
186 191parallel
Strand 4
A
280 282parallel
Strand 5
A
312 314parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 329first strand
Strand 2
A
320 322anti-parallel
Strand 3
A
341 342anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
98 103parallel
Strand 3
B
106 112anti-parallel
Strand 4
B
148 156anti-parallel
Strand 5
B
85 86anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
148 156anti-parallel
Strand 3
B
115 117anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 251first strand
Strand 2
B
212 219parallel
Strand 3
B
254 255parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 251first strand
Strand 2
B
212 219parallel
Strand 3
B
186 191parallel
Strand 4
B
280 282parallel
Strand 5
B
312 314parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 329first strand
Strand 2
B
320 322anti-parallel
Strand 3
B
341 342anti-parallel
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