Analysis of interatomic Contacts of Structural Units in PDB entry:
8A8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A8F entry

There are 2 chains in PDB entry 8A8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4ALA 298
B
 ILE 348PRO 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8A8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 17Right-handed alpha
Helix 2
AA2
A
30 48Right-handed alpha
Helix 3
AA3
A
67 79Right-handed alpha
Helix 4
AA4
A
98 113Right-handed alpha
Helix 5
AA5
A
126 131Right-handed alpha
Helix 6
AA6
A
134 143Right-handed alpha
Helix 7
AA7
A
144 156Right-handed alpha
Helix 8
AA8
A
182 187Right-handed alpha
Helix 9
AA9
A
198 206Right-handed alpha
Helix 10
AB1
A
227 239Right-handed alpha
Helix 11
AB2
A
270 274Right-handed 310
Helix 12
AB3
B
376 379Right-handed 310
Helix 13
AB4
B
396 405Right-handed alpha
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There are 4 sheets in PDB entry 8A8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
161 164parallel
Strand 3
A
168 170anti-parallel
Strand 4
A
242 245parallel
Strand 5
A
262 265parallel
Strand 6
A
254 257anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
A
86 88parallel
Strand 3
A
58 61parallel
Strand 4
A
279 284anti-parallel
Strand 5
A
289 295anti-parallel
Strand 6
B
373 374parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 119first strand
Strand 2
A
86 88parallel
Strand 3
A
58 61parallel
Strand 4
A
279 284anti-parallel
Strand 5
A
289 295anti-parallel
Strand 6
B
381 384parallel
Strand 7
B
393 395anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
224 226parallel
Strand 3
A
215 217anti-parallel
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