Analysis of interatomic Contacts of Structural Units in PDB entry:
8A8G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A8G entry

There is 1 chain in PDB entry 8A8G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8A8G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 26Right-handed alpha
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
36 48Right-handed alpha
Helix 4
AA4
A
59 70Right-handed alpha
Helix 5
AA5
A
120 130Right-handed alpha
Helix 6
AA6
A
136 144Right-handed alpha
Helix 7
AA7
A
164 168Right-handed 310
Helix 8
AA8
A
170 181Right-handed alpha
Helix 9
AA9
A
196 207Right-handed alpha
Helix 10
AB1
A
228 244Right-handed alpha
Helix 11
AB2
A
245 247Right-handed 310
Helix 12
AB3
A
262 276Right-handed alpha
Helix 13
AB4
A
297 302Right-handed alpha
Helix 14
AB5
A
303 310Right-handed 310
Helix 15
AB6
A
330 334Right-handed 310
Helix 16
AB7
A
337 339Right-handed 310
Helix 17
AB8
A
345 355Right-handed alpha
Helix 18
AB9
A
365 374Right-handed alpha
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There are 5 sheets in PDB entry 8A8G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
98 103parallel
Strand 3
A
106 117anti-parallel
Strand 4
A
148 156anti-parallel
Strand 5
A
56 57anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
98 103parallel
Strand 3
A
106 117anti-parallel
Strand 4
A
148 156anti-parallel
Strand 5
A
84 86anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
212 219parallel
Strand 3
A
254 255parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
212 219parallel
Strand 3
A
186 191parallel
Strand 4
A
280 282parallel
Strand 5
A
312 314parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 329first strand
Strand 2
A
320 322anti-parallel
Strand 3
A
341 342anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il