Analysis of interatomic Contacts of Structural Units in PDB entry:
8A8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A8H entry

There are 4 chains in PDB entry 8A8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 16LEU 189
B
 LEU 16LEU 189
C
 LYS 14LEU 189
D
 LEU 16LEU 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8A8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 46Right-handed alpha
Helix 2
AA2
A
55 63Right-handed alpha
Helix 3
AA3
A
69 90Right-handed alpha
Helix 4
AA4
A
102 113Right-handed alpha
Helix 5
AA5
A
171 186Right-handed alpha
Helix 6
AA6
B
31 46Right-handed alpha
Helix 7
AA7
B
55 63Right-handed alpha
Helix 8
AA8
B
69 89Right-handed alpha
Helix 9
AA9
B
102 113Right-handed alpha
Helix 10
AB1
B
171 186Right-handed alpha
Helix 11
AB2
C
31 46Right-handed alpha
Helix 12
AB3
C
55 63Right-handed alpha
Helix 13
AB4
C
69 89Right-handed alpha
Helix 14
AB5
C
102 113Right-handed alpha
Helix 15
AB6
C
171 186Right-handed alpha
Helix 16
AB7
D
31 46Right-handed alpha
Helix 17
AB8
D
55 63Right-handed alpha
Helix 18
AB9
D
69 89Right-handed alpha
Helix 19
AC1
D
102 113Right-handed alpha
Helix 20
AC2
D
171 186Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8A8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
93 97parallel
Strand 3
A
20 25parallel
Strand 4
A
116 122parallel
Strand 5
A
163 166parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
93 97parallel
Strand 3
B
20 25parallel
Strand 4
B
116 122parallel
Strand 5
B
163 166parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 54first strand
Strand 2
C
93 97parallel
Strand 3
C
20 25parallel
Strand 4
C
116 122parallel
Strand 5
C
163 166parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 54first strand
Strand 2
D
93 97parallel
Strand 3
D
20 25parallel
Strand 4
D
116 122parallel
Strand 5
D
163 166parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il