Analysis of interatomic Contacts of Structural Units in PDB entry:
8A8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A8J entry

There are 4 chains in PDB entry 8A8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 341
B
 MET 1PRO 341
X
 G 1 T 19
Y
 A 7 C 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8A8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 47Right-handed alpha
Helix 2
AA2
A
100 107Right-handed 310
Helix 3
AA3
A
114 118Right-handed 310
Helix 4
AA4
A
124 137Right-handed alpha
Helix 5
AA5
A
141 162Right-handed alpha
Helix 6
AA6
A
168 202Right-handed alpha
Helix 7
AA7
A
220 228Right-handed alpha
Helix 8
AA8
A
228 236Right-handed alpha
Helix 9
AA9
A
241 245Right-handed 310
Helix 10
AB1
A
261 285Right-handed alpha
Helix 11
AB2
A
300 312Right-handed alpha
Helix 12
AB3
B
35 47Right-handed alpha
Helix 13
AB4
B
101 107Right-handed 310
Helix 14
AB5
B
114 120Right-handed 310
Helix 15
AB6
B
124 137Right-handed alpha
Helix 16
AB7
B
140 163Right-handed alpha
Helix 17
AB8
B
168 205Right-handed alpha
Helix 18
AB9
B
220 226Right-handed alpha
Helix 19
AC1
B
228 236Right-handed alpha
Helix 20
AC2
B
241 245Right-handed 310
Helix 21
AC3
B
261 285Right-handed alpha
Helix 22
AC4
B
300 312Right-handed alpha
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There are 7 sheets in PDB entry 8A8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 9first strand
Strand 2
A
66 72anti-parallel
Strand 3
A
81 85anti-parallel
Strand 4
A
91 94anti-parallel
Strand 5
A
97 98anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
316 320parallel
Strand 3
A
289 293parallel
Strand 4
A
110 113parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 214first strand
Strand 2
A
246 251anti-parallel
Strand 3
A
254 255anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
337 339anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 9first strand
Strand 2
B
66 73anti-parallel
Strand 3
B
78 85anti-parallel
Strand 4
B
92 94anti-parallel
Strand 5
B
97 98anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 113first strand
Strand 2
B
289 293parallel
Strand 3
B
316 321parallel
Strand 4
B
24 29parallel
Strand 5
B
331 334parallel
Strand 6
B
337 339anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 214first strand
Strand 2
B
246 251anti-parallel
Strand 3
B
254 255anti-parallel
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