Analysis of interatomic Contacts of Structural Units in PDB entry:
8A8K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8A8K entry

There are 4 chains in PDB entry 8A8K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -1	LEU 315
B	HIS 0	LEU 315
C	HIS 0	LEU 315
D	HIS 0	PHE 296

There are 96 helices in PDB entry 8A8K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	22	Right-handed alpha
Helix 2	AA2	A	40	50	Right-handed alpha
Helix 3	AA3	A	60	65	Right-handed alpha
Helix 4	AA4	A	104	114	Right-handed alpha
Helix 5	AA5	A	117	129	Right-handed alpha
Helix 6	AA6	A	130	134	Right-handed 310
Helix 7	AA7	A	135	145	Right-handed alpha
Helix 8	AA8	A	148	165	Right-handed alpha
Helix 9	AA9	A	167	181	Right-handed alpha
Helix 10	AB1	A	182	187	Right-handed alpha
Helix 11	AB2	A	189	209	Right-handed alpha
Helix 12	AB3	A	227	238	Right-handed alpha
Helix 13	AB4	A	263	266	Right-handed 310
Helix 14	AB5	A	270	281	Right-handed alpha
Helix 15	AB6	A	297	299	Right-handed 310
Helix 16	AB7	A	300	313	Right-handed alpha
Helix 17	AB8	B	8	22	Right-handed alpha
Helix 18	AB9	B	40	50	Right-handed alpha
Helix 19	AC1	B	60	65	Right-handed alpha
Helix 20	AC2	B	104	114	Right-handed alpha
Helix 21	AC3	B	117	129	Right-handed alpha
Helix 22	AC4	B	130	134	Right-handed 310
Helix 23	AC5	B	135	145	Right-handed alpha
Helix 24	AC6	B	148	165	Right-handed alpha
Helix 25	AC7	B	167	181	Right-handed alpha
Helix 26	AC8	B	182	187	Right-handed alpha
Helix 27	AC9	B	189	209	Right-handed alpha
Helix 28	AD1	B	227	238	Right-handed alpha
Helix 29	AD2	B	263	266	Right-handed 310
Helix 30	AD3	B	270	281	Right-handed alpha
Helix 31	AD4	B	297	299	Right-handed 310
Helix 32	AD5	B	300	313	Right-handed alpha
Helix 33	AD6	C	8	22	Right-handed alpha
Helix 34	AD7	C	40	50	Right-handed alpha
Helix 35	AD8	C	60	65	Right-handed alpha
Helix 36	AD9	C	104	114	Right-handed alpha
Helix 37	AE1	C	117	129	Right-handed alpha
Helix 38	AE2	C	130	134	Right-handed 310
Helix 39	AE3	C	135	145	Right-handed alpha
Helix 40	AE4	C	148	165	Right-handed alpha
Helix 41	AE5	C	167	181	Right-handed alpha
Helix 42	AE6	C	182	187	Right-handed alpha
Helix 43	AE7	C	189	209	Right-handed alpha
Helix 44	AE8	C	227	238	Right-handed alpha
Helix 45	AE9	C	263	266	Right-handed 310
Helix 46	AF1	C	270	281	Right-handed alpha
Helix 47	AF2	C	297	299	Right-handed 310
Helix 48	AF3	C	300	313	Right-handed alpha
Helix 49	AF4	D	8	22	Right-handed alpha
Helix 50	AF5	D	40	50	Right-handed alpha
Helix 51	AF6	D	60	65	Right-handed alpha
Helix 52	AF7	D	104	114	Right-handed alpha
Helix 53	AF8	D	117	129	Right-handed alpha
Helix 54	AF9	D	130	134	Right-handed 310
Helix 55	AG1	D	135	145	Right-handed alpha
Helix 56	AG2	D	148	165	Right-handed alpha
Helix 57	AG3	D	167	181	Right-handed alpha
Helix 58	AG4	D	182	187	Right-handed alpha
Helix 59	AG5	D	189	209	Right-handed alpha
Helix 60	AG6	D	227	238	Right-handed alpha
Helix 61	AG7	D	263	266	Right-handed 310
Helix 62	AG8	D	270	281	Right-handed alpha
Helix 63	AG9	D	297	299	Right-handed 310
Helix 64	AH1	D	300	313	Right-handed alpha
Helix 65	AH2	E	8	22	Right-handed alpha
Helix 66	AH3	E	40	50	Right-handed alpha
Helix 67	AH4	E	60	65	Right-handed alpha
Helix 68	AH5	E	104	114	Right-handed alpha
Helix 69	AH6	E	117	129	Right-handed alpha
Helix 70	AH7	E	130	134	Right-handed 310
Helix 71	AH8	E	135	145	Right-handed alpha
Helix 72	AH9	E	148	165	Right-handed alpha
Helix 73	AI1	E	167	181	Right-handed alpha
Helix 74	AI2	E	182	187	Right-handed alpha
Helix 75	AI3	E	189	209	Right-handed alpha
Helix 76	AI4	E	227	238	Right-handed alpha
Helix 77	AI5	E	263	266	Right-handed 310
Helix 78	AI6	E	270	281	Right-handed alpha
Helix 79	AI7	E	297	299	Right-handed 310
Helix 80	AI8	E	300	313	Right-handed alpha
Helix 81	AI9	F	8	22	Right-handed alpha
Helix 82	AJ1	F	40	50	Right-handed alpha
Helix 83	AJ2	F	60	65	Right-handed alpha
Helix 84	AJ3	F	104	114	Right-handed alpha
Helix 85	AJ4	F	117	129	Right-handed alpha
Helix 86	AJ5	F	130	134	Right-handed 310
Helix 87	AJ6	F	135	145	Right-handed alpha
Helix 88	AJ7	F	148	165	Right-handed alpha
Helix 89	AJ8	F	167	181	Right-handed alpha
Helix 90	AJ9	F	182	187	Right-handed alpha
Helix 91	AK1	F	189	209	Right-handed alpha
Helix 92	AK2	F	227	238	Right-handed alpha
Helix 93	AK3	F	263	266	Right-handed 310
Helix 94	AK4	F	270	281	Right-handed alpha
Helix 95	AK5	F	297	299	Right-handed 310
Helix 96	AK6	F	300	313	Right-handed alpha

There are 12 sheets in PDB entry 8A8K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	1	5	parallel
Strand 3	A	52	56	parallel
Strand 4	A	70	74	parallel
Strand 5	A	87	90	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	213	first strand
Strand 2	A	216	221	anti-parallel
Strand 3	A	243	251	parallel
Strand 4	A	254	261	anti-parallel
Strand 5	A	291	296	anti-parallel
Strand 6	A	284	287	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	1	5	parallel
Strand 3	B	52	56	parallel
Strand 4	B	70	74	parallel
Strand 5	B	87	90	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	213	first strand
Strand 2	B	216	221	anti-parallel
Strand 3	B	243	251	parallel
Strand 4	B	254	261	anti-parallel
Strand 5	B	291	296	anti-parallel
Strand 6	B	284	287	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	1	5	parallel
Strand 3	C	52	56	parallel
Strand 4	C	70	74	parallel
Strand 5	C	87	90	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	213	first strand
Strand 2	C	216	221	anti-parallel
Strand 3	C	243	251	parallel
Strand 4	C	254	261	anti-parallel
Strand 5	C	291	296	anti-parallel
Strand 6	C	284	287	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	30	first strand
Strand 2	D	1	5	parallel
Strand 3	D	52	56	parallel
Strand 4	D	70	74	parallel
Strand 5	D	87	90	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	213	first strand
Strand 2	D	216	221	anti-parallel
Strand 3	D	243	248	parallel
Strand 4	D	255	261	anti-parallel
Strand 5	D	291	296	anti-parallel
Strand 6	D	284	287	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	30	first strand
Strand 2	E	1	5	parallel
Strand 3	E	52	56	parallel
Strand 4	E	70	74	parallel
Strand 5	E	87	90	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	210	213	first strand
Strand 2	E	216	221	anti-parallel
Strand 3	E	243	251	parallel
Strand 4	E	254	261	anti-parallel
Strand 5	E	291	296	anti-parallel
Strand 6	E	284	287	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	30	first strand
Strand 2	F	1	5	parallel
Strand 3	F	52	56	parallel
Strand 4	F	70	74	parallel
Strand 5	F	87	90	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	210	213	first strand
Strand 2	F	216	221	anti-parallel
Strand 3	F	243	251	parallel
Strand 4	F	254	261	anti-parallel
Strand 5	F	291	296	anti-parallel
Strand 6	F	284	287	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8A8K

Analysis of interatomic Contacts of Structural Units in PDB entry:
8A8K