Analysis of interatomic Contacts of Structural Units in PDB entry:
8A8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A8L entry

There is 1 chain in PDB entry 8A8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ASP 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8A8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 16Right-handed alpha
Helix 2
AA2
A
17 28Right-handed alpha
Helix 3
AA3
A
43 53Right-handed alpha
Helix 4
AA4
A
59 64Right-handed 310
Helix 5
AA5
A
66 71Right-handed alpha
Helix 6
AA6
A
74 78Right-handed 310
Helix 7
AA7
A
79 93Right-handed alpha
Helix 8
AA8
A
95 118Right-handed alpha
Helix 9
AA9
A
129 143Right-handed alpha
Helix 10
AB1
A
145 147Right-handed 310
Helix 11
AB2
A
148 165Right-handed alpha
Helix 12
AB3
A
169 197Right-handed alpha
Helix 13
AB4
A
201 209Right-handed alpha
Helix 14
AB5
A
217 249Right-handed alpha
Helix 15
AB6
A
250 260Right-handed alpha
Helix 16
AB7
A
263 275Right-handed alpha
Helix 17
AB8
A
306 310Right-handed alpha
Helix 18
AB9
A
345 349Right-handed 310
Helix 19
AC1
A
352 371Right-handed alpha
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There are 4 sheets in PDB entry 8A8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
38 41anti-parallel
Strand 3
A
301 305parallel
Strand 4
A
280 285anti-parallel
Strand 5
A
57 58anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
375 376anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
294 296anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 384first strand
Strand 2
A
390 391anti-parallel
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