Analysis of interatomic Contacts of Structural Units in PDB entry:
8A8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A8M entry

There are 2 chains in PDB entry 8A8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5LEU 353
B
 LEU 1ASP 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8A8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 76Right-handed alpha
Helix 2
AA2
A
113 120Right-handed alpha
Helix 3
AA3
A
123 145Right-handed alpha
Helix 4
AA4
A
189 195Right-handed alpha
Helix 5
AA5
A
201 218Right-handed alpha
Helix 6
AA6
A
229 240Right-handed alpha
Helix 7
AA7
A
252 257Right-handed alpha
Helix 8
AA8
A
278 289Right-handed alpha
Helix 9
AA9
A
298 303Right-handed alpha
Helix 10
AB1
A
304 311Right-handed 310
Helix 11
AB2
A
313 317Right-handed 310
Helix 12
AB3
A
326 330Right-handed 310
Helix 13
AB4
A
333 346Right-handed alpha
Helix 14
AB5
B
49 51Right-handed 310
Helix 15
AB6
B
89 106Right-handed alpha
Helix 16
AB7
B
136 147Right-handed alpha
Helix 17
AB8
B
151 173Right-handed alpha
Helix 18
AB9
B
181 183Right-handed 310
Helix 19
AC1
B
221 226Right-handed alpha
Helix 20
AC2
B
235 253Right-handed alpha
Helix 21
AC3
B
262 273Right-handed alpha
Helix 22
AC4
B
284 295Right-handed alpha
Helix 23
AC5
B
304 311Right-handed alpha
Helix 24
AC6
B
311 320Right-handed alpha
Helix 25
AC7
B
323 333Right-handed alpha
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There are 8 sheets in PDB entry 8A8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
16 20anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
41 43anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
104 106anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
156 158anti-parallel
Strand 3
A
165 166anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
44 46anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 58first strand
Strand 2
B
68 72anti-parallel
Strand 3
B
78 80anti-parallel
Strand 4
B
129 130anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
185 187anti-parallel
Strand 3
B
193 195anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 176first strand
Strand 2
B
202 203anti-parallel
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