Analysis of interatomic Contacts of Structural Units in PDB entry:
8A8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A8Q entry

There are 10 chains in PDB entry 8A8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 223GLU 349
A
 VAL 351GLU 440
B
 ALA 224GLU 349
B
 VAL 351GLU 440
C
 GLY 51VAL 72
C
 ASN 74PRO 85
C
 ARG 87PRO 99
D
 GLY 51VAL 72
D
 ASN 74PRO 85
D
 ARG 87PRO 99
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 8A8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
272 278Right-handed 310
Helix 2
AA2
A
284 292Right-handed alpha
Helix 3
AA3
A
293 295Right-handed 310
Helix 4
AA4
A
373 385Right-handed alpha
Helix 5
AA5
A
388 397Right-handed alpha
Helix 6
AA6
B
272 278Right-handed 310
Helix 7
AA7
B
284 292Right-handed alpha
Helix 8
AA8
B
293 295Right-handed 310
Helix 9
AA9
B
373 385Right-handed alpha
Helix 10
AB1
B
388 397Right-handed alpha
Helix 11
AB2
C
60 74Right-handed alpha
Helix 12
AB3
C
85 89Right-handed 310
Helix 13
AB4
C
92 97Right-handed 310
Helix 14
AB5
D
60 74Right-handed alpha
Helix 15
AB6
D
85 89Right-handed 310
Helix 16
AB7
D
92 97Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 8A8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 255first strand
Strand 2
A
230 243anti-parallel
Strand 3
A
319 328anti-parallel
Strand 4
A
362 371anti-parallel
Strand 5
A
357 359anti-parallel
Back to list of sheets
Back to top of page

There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 270first strand
Strand 2
A
431 438parallel
Strand 3
A
297 304anti-parallel
Strand 4
A
413 423parallel
Strand 5
A
399 407anti-parallel
Strand 6
A
334 342anti-parallel
Strand 7
A
345 354anti-parallel
Strand 8
C
52 57anti-parallel
Strand 9
D
52 57anti-parallel
Strand 10
B
345 354anti-parallel
Strand 11
B
334 342anti-parallel
Strand 12
B
399 407anti-parallel
Strand 13
B
413 423anti-parallel
Strand 14
B
297 304parallel
Strand 15
B
431 438anti-parallel
Strand 16
B
267 270parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 255first strand
Strand 2
B
230 243anti-parallel
Strand 3
B
319 328anti-parallel
Strand 4
B
362 371anti-parallel
Strand 5
B
357 359anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il