Analysis of interatomic Contacts of Structural Units in PDB entry:
8A8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A8Y entry

There are 2 chains in PDB entry 8A8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6ALA 586
B
 ASP 4LYS 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8A8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed alpha
Helix 2
AA2
A
16 21Right-handed alpha
Helix 3
AA3
A
22 23Right-handed 310
Helix 4
AA4
A
24 26Right-handed 310
Helix 5
AA5
A
27 40Right-handed alpha
Helix 6
AA6
A
53 55Right-handed 310
Helix 7
AA7
A
56 67Right-handed alpha
Helix 8
AA8
A
83 90Right-handed alpha
Helix 9
AA9
A
125 141Right-handed alpha
Helix 10
AB1
A
153 156Right-handed 310
Helix 11
AB2
A
157 171Right-handed alpha
Helix 12
AB3
A
206 212Right-handed alpha
Helix 13
AB4
A
224 238Right-handed alpha
Helix 14
AB5
A
286 301Right-handed alpha
Helix 15
AB6
A
318 325Right-handed alpha
Helix 16
AB7
A
335 349Right-handed alpha
Helix 17
AB8
A
359 363Right-handed alpha
Helix 18
AB9
A
365 373Right-handed alpha
Helix 19
AC1
A
401 408Right-handed alpha
Helix 20
AC2
A
419 433Right-handed alpha
Helix 21
AC3
A
480 492Right-handed alpha
Helix 22
AC4
A
505 515Right-handed alpha
Helix 23
AC5
A
530 542Right-handed alpha
Helix 24
AC6
A
562 570Right-handed alpha
Helix 25
AC7
A
573 586Right-handed alpha
Helix 26
AC8
B
8 18Right-handed alpha
Helix 27
AC9
B
19 23Right-handed 310
Helix 28
AD1
B
24 26Right-handed 310
Helix 29
AD2
B
27 41Right-handed alpha
Helix 30
AD3
B
53 55Right-handed 310
Helix 31
AD4
B
56 67Right-handed alpha
Helix 32
AD5
B
82 90Right-handed alpha
Helix 33
AD6
B
126 141Right-handed alpha
Helix 34
AD7
B
153 156Right-handed 310
Helix 35
AD8
B
157 171Right-handed alpha
Helix 36
AD9
B
206 212Right-handed alpha
Helix 37
AE1
B
224 238Right-handed alpha
Helix 38
AE2
B
286 301Right-handed alpha
Helix 39
AE3
B
318 325Right-handed alpha
Helix 40
AE4
B
335 349Right-handed alpha
Helix 41
AE5
B
359 363Right-handed alpha
Helix 42
AE6
B
365 372Right-handed alpha
Helix 43
AE7
B
401 406Right-handed alpha
Helix 44
AE8
B
419 433Right-handed alpha
Helix 45
AE9
B
480 492Right-handed alpha
Helix 46
AF1
B
505 516Right-handed alpha
Helix 47
AF2
B
530 542Right-handed alpha
Helix 48
AF3
B
562 570Right-handed alpha
Helix 49
AF4
B
573 586Right-handed alpha
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There are 6 sheets in PDB entry 8A8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
146 151parallel
Strand 3
A
174 180parallel
Strand 4
A
242 247parallel
Strand 5
A
215 221parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
305 309parallel
Strand 3
A
352 358parallel
Strand 4
A
381 385parallel
Strand 5
A
438 441parallel
Strand 6
A
413 415parallel
Strand 7
A
500 502anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 467first strand
Strand 2
A
494 497anti-parallel
Strand 3
A
471 477parallel
Strand 4
A
516 526parallel
Strand 5
A
548 553parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 77first strand
Strand 2
B
146 151parallel
Strand 3
B
174 180parallel
Strand 4
B
242 247parallel
Strand 5
B
215 221parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 331first strand
Strand 2
B
305 309parallel
Strand 3
B
352 358parallel
Strand 4
B
381 385parallel
Strand 5
B
438 441parallel
Strand 6
B
413 415parallel
Strand 7
B
500 502anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 467first strand
Strand 2
B
494 497anti-parallel
Strand 3
B
472 477parallel
Strand 4
B
518 526parallel
Strand 5
B
548 553parallel
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