Analysis of interatomic Contacts of Structural Units in PDB entry:
8A90


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A90 entry

There are 2 chains in PDB entry 8A90 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4LEU 531
B
 THR 2LEU 531
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8A90. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 30Right-handed alpha
Helix 2
AA2
A
30 41Right-handed alpha
Helix 3
AA3
A
41 52Right-handed alpha
Helix 4
AA4
A
52 62Right-handed alpha
Helix 5
AA5
A
63 66Right-handed 310
Helix 6
AA6
A
74 76Right-handed 310
Helix 7
AA7
A
77 92Right-handed alpha
Helix 8
AA8
A
92 113Right-handed alpha
Helix 9
AA9
A
118 125Right-handed 310
Helix 10
AB1
A
126 130Right-handed 310
Helix 11
AB2
A
148 153Right-handed alpha
Helix 12
AB3
A
171 175Right-handed 310
Helix 13
AB4
A
198 207Right-handed alpha
Helix 14
AB5
A
214 221Right-handed alpha
Helix 15
AB6
A
227 232Right-handed alpha
Helix 16
AB7
A
289 293Right-handed 310
Helix 17
AB8
A
311 318Right-handed alpha
Helix 18
AB9
A
339 347Right-handed alpha
Helix 19
AC1
A
407 419Right-handed alpha
Helix 20
AC2
A
434 440Right-handed alpha
Helix 21
AC3
A
441 443Right-handed 310
Helix 22
AC4
A
448 455Right-handed alpha
Helix 23
AC5
A
461 473Right-handed alpha
Helix 24
AC6
A
485 487Right-handed 310
Helix 25
AC7
A
488 493Right-handed alpha
Helix 26
AC8
A
500 516Right-handed alpha
Helix 27
AC9
B
25 30Right-handed alpha
Helix 28
AD1
B
30 41Right-handed alpha
Helix 29
AD2
B
41 51Right-handed alpha
Helix 30
AD3
B
53 62Right-handed alpha
Helix 31
AD4
B
74 76Right-handed 310
Helix 32
AD5
B
77 92Right-handed alpha
Helix 33
AD6
B
92 113Right-handed alpha
Helix 34
AD7
B
118 124Right-handed alpha
Helix 35
AD8
B
125 130Right-handed 310
Helix 36
AD9
B
148 153Right-handed alpha
Helix 37
AE1
B
171 175Right-handed 310
Helix 38
AE2
B
198 207Right-handed alpha
Helix 39
AE3
B
214 221Right-handed alpha
Helix 40
AE4
B
227 232Right-handed alpha
Helix 41
AE5
B
289 293Right-handed 310
Helix 42
AE6
B
311 318Right-handed alpha
Helix 43
AE7
B
339 347Right-handed alpha
Helix 44
AE8
B
407 419Right-handed alpha
Helix 45
AE9
B
434 440Right-handed alpha
Helix 46
AF1
B
441 443Right-handed 310
Helix 47
AF2
B
448 455Right-handed alpha
Helix 48
AF3
B
461 473Right-handed alpha
Helix 49
AF4
B
485 487Right-handed 310
Helix 50
AF5
B
488 493Right-handed alpha
Helix 51
AF6
B
500 516Right-handed alpha
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There are 10 sheets in PDB entry 8A90. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
6 9anti-parallel
Strand 3
A
235 236anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
14 19anti-parallel
Strand 3
A
163 168anti-parallel
Strand 4
A
189 193anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
143 147anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
322 328parallel
Strand 3
A
297 301parallel
Strand 4
A
270 273parallel
Strand 5
A
261 265anti-parallel
Strand 6
A
252 258anti-parallel
Strand 7
A
527 531anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 363first strand
Strand 2
A
366 371anti-parallel
Strand 3
A
387 392anti-parallel
Strand 4
A
395 399anti-parallel
Strand 5
A
423 427parallel
Strand 6
A
476 480parallel
Strand 7
A
519 522parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 213first strand
Strand 2
B
6 9anti-parallel
Strand 3
B
235 236anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
14 19anti-parallel
Strand 3
B
163 168anti-parallel
Strand 4
B
189 193anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
143 147anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 355first strand
Strand 2
B
322 328parallel
Strand 3
B
297 301parallel
Strand 4
B
270 273parallel
Strand 5
B
261 265anti-parallel
Strand 6
B
252 258anti-parallel
Strand 7
B
527 531anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 363first strand
Strand 2
B
366 371anti-parallel
Strand 3
B
387 392anti-parallel
Strand 4
B
395 399anti-parallel
Strand 5
B
423 426parallel
Strand 6
B
476 479parallel
Strand 7
B
519 522parallel
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