Analysis of interatomic Contacts of Structural Units in PDB entry:
8A9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8A9C entry

There are 2 chains in PDB entry 8A9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3LEU 585
B
 PHE 3LEU 585
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8A9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
16 21Right-handed alpha
Helix 3
AA3
A
22 23Right-handed 310
Helix 4
AA4
A
24 26Right-handed 310
Helix 5
AA5
A
27 43Right-handed alpha
Helix 6
AA6
A
50 56Right-handed alpha
Helix 7
AA7
A
56 67Right-handed alpha
Helix 8
AA8
A
79 81Right-handed 310
Helix 9
AA9
A
82 89Right-handed alpha
Helix 10
AB1
A
90 98Right-handed 310
Helix 11
AB2
A
125 141Right-handed alpha
Helix 12
AB3
A
153 156Right-handed 310
Helix 13
AB4
A
157 171Right-handed alpha
Helix 14
AB5
A
206 212Right-handed alpha
Helix 15
AB6
A
224 237Right-handed alpha
Helix 16
AB7
A
286 302Right-handed alpha
Helix 17
AB8
A
318 325Right-handed alpha
Helix 18
AB9
A
335 349Right-handed alpha
Helix 19
AC1
A
359 363Right-handed alpha
Helix 20
AC2
A
365 373Right-handed alpha
Helix 21
AC3
A
393 398Right-handed 310
Helix 22
AC4
A
401 408Right-handed alpha
Helix 23
AC5
A
419 433Right-handed alpha
Helix 24
AC6
A
480 492Right-handed alpha
Helix 25
AC7
A
505 516Right-handed alpha
Helix 26
AC8
A
530 542Right-handed alpha
Helix 27
AC9
A
562 570Right-handed alpha
Helix 28
AD1
A
573 585Right-handed alpha
Helix 29
AD2
B
10 14Right-handed 310
Helix 30
AD3
B
16 21Right-handed alpha
Helix 31
AD4
B
22 23Right-handed 310
Helix 32
AD5
B
24 26Right-handed 310
Helix 33
AD6
B
27 43Right-handed alpha
Helix 34
AD7
B
51 56Right-handed alpha
Helix 35
AD8
B
56 67Right-handed alpha
Helix 36
AD9
B
79 81Right-handed 310
Helix 37
AE1
B
82 89Right-handed alpha
Helix 38
AE2
B
90 98Right-handed 310
Helix 39
AE3
B
109 113Right-handed 310
Helix 40
AE4
B
125 141Right-handed alpha
Helix 41
AE5
B
153 156Right-handed 310
Helix 42
AE6
B
157 171Right-handed alpha
Helix 43
AE7
B
205 213Right-handed alpha
Helix 44
AE8
B
224 237Right-handed alpha
Helix 45
AE9
B
286 302Right-handed alpha
Helix 46
AF1
B
318 325Right-handed alpha
Helix 47
AF2
B
335 349Right-handed alpha
Helix 48
AF3
B
359 363Right-handed alpha
Helix 49
AF4
B
365 373Right-handed alpha
Helix 50
AF5
B
394 398Right-handed 310
Helix 51
AF6
B
401 408Right-handed alpha
Helix 52
AF7
B
419 432Right-handed alpha
Helix 53
AF8
B
480 492Right-handed alpha
Helix 54
AF9
B
505 516Right-handed alpha
Helix 55
AG1
B
530 542Right-handed alpha
Helix 56
AG2
B
562 570Right-handed alpha
Helix 57
AG3
B
573 585Right-handed alpha
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There are 6 sheets in PDB entry 8A9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
146 151parallel
Strand 3
A
175 179parallel
Strand 4
A
242 247parallel
Strand 5
A
215 221parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
305 309parallel
Strand 3
A
352 358parallel
Strand 4
A
381 385parallel
Strand 5
A
438 441parallel
Strand 6
A
413 415parallel
Strand 7
A
500 502anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 467first strand
Strand 2
A
494 497anti-parallel
Strand 3
A
472 477parallel
Strand 4
A
518 526parallel
Strand 5
A
548 553parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 76first strand
Strand 2
B
146 151parallel
Strand 3
B
174 179parallel
Strand 4
B
242 246parallel
Strand 5
B
215 220parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 331first strand
Strand 2
B
305 309parallel
Strand 3
B
352 358parallel
Strand 4
B
381 385parallel
Strand 5
B
438 441parallel
Strand 6
B
413 415parallel
Strand 7
B
500 502anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 467first strand
Strand 2
B
494 497anti-parallel
Strand 3
B
472 477parallel
Strand 4
B
518 526parallel
Strand 5
B
548 553parallel
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