Analysis of interatomic Contacts of Structural Units in PDB entry:
8AA7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AA7 entry

There is 1 chain in PDB entry 8AA7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ASP 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 8AA7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 16Right-handed alpha
Helix 2
AA2
A
17 28Right-handed alpha
Helix 3
AA3
A
43 53Right-handed alpha
Helix 4
AA4
A
60 71Right-handed alpha
Helix 5
AA5
A
74 78Right-handed 310
Helix 6
AA6
A
79 93Right-handed alpha
Helix 7
AA7
A
95 118Right-handed alpha
Helix 8
AA8
A
129 143Right-handed alpha
Helix 9
AA9
A
145 147Right-handed 310
Helix 10
AB1
A
148 165Right-handed alpha
Helix 11
AB2
A
169 197Right-handed alpha
Helix 12
AB3
A
201 209Right-handed alpha
Helix 13
AB4
A
217 250Right-handed alpha
Helix 14
AB5
A
250 260Right-handed alpha
Helix 15
AB6
A
263 275Right-handed alpha
Helix 16
AB7
A
306 311Right-handed alpha
Helix 17
AB8
A
345 349Right-handed 310
Helix 18
AB9
A
352 371Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8AA7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
38 41anti-parallel
Strand 3
A
301 305parallel
Strand 4
A
280 285anti-parallel
Strand 5
A
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
375 376anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
294 296anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 384first strand
Strand 2
A
390 391anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il