Analysis of interatomic Contacts of Structural Units in PDB entry:
8AAA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AAA entry

There are 2 chains in PDB entry 8AAA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 336PRO 528
B
 ALA 1ALA 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8AAA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
338 345Right-handed alpha
Helix 2
AA2
A
366 371Right-handed alpha
Helix 3
AA3
A
372 375Right-handed 310
Helix 4
AA4
A
384 388Right-handed 310
Helix 5
AA5
A
406 411Right-handed 310
Helix 6
AA6
A
417 423Right-handed alpha
Helix 7
AA7
A
439 444Right-handed alpha
Helix 8
AA8
A
503 506Right-handed 310
Helix 9
AA9
B
6 13Right-handed alpha
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There are 4 sheets in PDB entry 8AAA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 359first strand
Strand 2
A
395 404anti-parallel
Strand 3
A
508 517anti-parallel
Strand 4
A
432 438anti-parallel
Strand 5
A
377 381anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
525 526parallel
Strand 3
A
392 393anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 455first strand
Strand 2
A
493 495anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 475first strand
Strand 2
A
489 490anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il