Analysis of interatomic Contacts of Structural Units in PDB entry:
8AAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AAJ entry

There are 3 chains in PDB entry 8AAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2MET 358
B
 SER 1SER 185
C
 ARG 6TRP 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8AAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 18Right-handed alpha
Helix 2
AA2
A
20 35Right-handed alpha
Helix 3
AA3
A
39 52Right-handed alpha
Helix 4
AA4
A
54 58Right-handed 310
Helix 5
AA5
A
74 77Right-handed 310
Helix 6
AA6
A
121 128Right-handed alpha
Helix 7
AA7
A
168 172Right-handed 310
Helix 8
AA8
A
189 193Right-handed 310
Helix 9
AA9
A
267 275Right-handed alpha
Helix 10
AB1
A
277 291Right-handed alpha
Helix 11
AB2
A
294 306Right-handed alpha
Helix 12
AB3
A
307 311Right-handed 310
Helix 13
AB4
A
340 356Right-handed alpha
Helix 14
AB5
B
11 17Right-handed alpha
Helix 15
AB6
B
82 88Right-handed alpha
Helix 16
AB7
B
118 150Right-handed alpha
Helix 17
AB8
B
153 163Right-handed alpha
Helix 18
AB9
B
166 185Right-handed alpha
Helix 19
AC1
C
93 113Right-handed alpha
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There are 8 sheets in PDB entry 8AAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
100 109anti-parallel
Strand 3
A
114 120anti-parallel
Strand 4
A
152 156parallel
Strand 5
A
143 146anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
100 109anti-parallel
Strand 3
A
79 87anti-parallel
Strand 4
A
136 140anti-parallel
Strand 5
A
161 164anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
200 217parallel
Strand 3
A
314 324anti-parallel
Strand 4
A
328 338anti-parallel
Strand 5
A
260 266parallel
Strand 6
A
245 255anti-parallel
Strand 7
A
200 217anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
233 236anti-parallel
Strand 3
A
240 241anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
42 49parallel
Strand 3
B
61 67anti-parallel
Strand 4
B
54 55anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
42 49parallel
Strand 3
B
93 102anti-parallel
Strand 4
B
107 116anti-parallel
Strand 5
B
72 78parallel
Strand 6
B
61 67anti-parallel
Strand 7
B
54 55anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
31 33anti-parallel
Strand 3
B
39 40anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
25 36parallel
Strand 3
C
65 75anti-parallel
Strand 4
C
78 88anti-parallel
Strand 5
C
50 54parallel
Strand 6
C
41 45anti-parallel
Strand 7
C
25 36anti-parallel
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