Analysis of interatomic Contacts of Structural Units in PDB entry:
8AAQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AAQ entry

There is 1 chain in PDB entry 8AAQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 67ILE 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8AAQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 88Right-handed alpha
Helix 2
AA2
A
126 137Right-handed alpha
Helix 3
AA3
A
140 145Right-handed alpha
Helix 4
AA4
A
265 294Right-handed alpha
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There are 2 sheets in PDB entry 8AAQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 97first strand
Strand 2
A
104 110anti-parallel
Strand 3
A
114 123anti-parallel
Strand 4
A
246 259anti-parallel
Strand 5
A
226 240anti-parallel
Strand 6
A
203 210anti-parallel
Strand 7
A
179 190anti-parallel
Strand 8
A
196 197anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 158first strand
Strand 2
A
161 168anti-parallel
Strand 3
A
179 190anti-parallel
Strand 4
A
223 224parallel
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