Analysis of interatomic Contacts of Structural Units in PDB entry:
8AAS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AAS entry

There are 4 chains in PDB entry 8AAS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 186MET 358
B
 LYS 3MET 180
C
 VAL 5TRP 117
F
 T 1 T 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8AAS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
189 193Right-handed 310
Helix 2
AA2
A
267 275Right-handed alpha
Helix 3
AA3
A
277 291Right-handed alpha
Helix 4
AA4
A
294 307Right-handed alpha
Helix 5
AA5
A
308 311Right-handed 310
Helix 6
AA6
A
340 356Right-handed alpha
Helix 7
AA7
B
11 17Right-handed alpha
Helix 8
AA8
B
81 88Right-handed alpha
Helix 9
AA9
B
118 151Right-handed alpha
Helix 10
AB1
B
153 163Right-handed alpha
Helix 11
AB2
B
166 180Right-handed alpha
Helix 12
AB3
C
15 19Right-handed 310
Helix 13
AB4
C
93 113Right-handed alpha
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There are 6 sheets in PDB entry 8AAS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 217first strand
Strand 2
A
245 255anti-parallel
Strand 3
A
260 266anti-parallel
Strand 4
A
328 338parallel
Strand 5
A
314 324anti-parallel
Strand 6
A
200 217anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
233 236anti-parallel
Strand 3
A
240 241anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
42 49parallel
Strand 3
B
61 67anti-parallel
Strand 4
B
54 55anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
42 49parallel
Strand 3
B
93 103anti-parallel
Strand 4
B
106 116anti-parallel
Strand 5
B
72 78parallel
Strand 6
B
61 67anti-parallel
Strand 7
B
54 55anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
31 33anti-parallel
Strand 3
B
39 40anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
25 36parallel
Strand 3
C
65 75anti-parallel
Strand 4
C
78 88anti-parallel
Strand 5
C
50 54parallel
Strand 6
C
41 45anti-parallel
Strand 7
C
25 36anti-parallel
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