Analysis of interatomic Contacts of Structural Units in PDB entry:
8AAU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AAU entry

There is 1 chain in PDB entry 8AAU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 SER 328ARG 634
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8AAU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
335 337Right-handed 310
Helix 2
AA2
L
374 390Right-handed alpha
Helix 3
AA3
L
421 428Right-handed alpha
Helix 4
AA4
L
433 454Right-handed alpha
Helix 5
AA5
L
512 516Right-handed 310
Helix 6
AA6
L
517 522Right-handed alpha
Helix 7
AA7
L
528 545Right-handed alpha
Helix 8
AA8
L
562 570Right-handed alpha
Helix 9
AA9
L
578 587Right-handed alpha
Helix 10
AB1
L
590 594Right-handed 310
Helix 11
AB2
L
596 614Right-handed alpha
Helix 12
AB3
L
617 634Right-handed alpha
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There are 3 sheets in PDB entry 8AAU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
332 334first strand
Strand 2
L
399 405parallel
Strand 3
L
408 414anti-parallel
Strand 4
L
364 370anti-parallel
Strand 5
L
351 358anti-parallel
Strand 6
L
339 347anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
418 420first strand
Strand 2
L
466 469anti-parallel
Strand 3
L
474 476anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
456 457first strand
Strand 2
L
483 484anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il