Analysis of interatomic Contacts of Structural Units in PDB entry:
8AAY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AAY entry

There are 4 chains in PDB entry 8AAY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 81	GLY 610
B	LYS 81	ALA 591
C	ASP 44	ASN 643
D	ASP 44	ASN 642

There are 58 helices in PDB entry 8AAY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	97	Right-handed alpha
Helix 2	AA2	A	97	104	Right-handed alpha
Helix 3	AA3	A	176	190	Right-handed alpha
Helix 4	AA4	A	192	200	Right-handed alpha
Helix 5	AA5	A	218	223	Right-handed alpha
Helix 6	AA6	A	252	256	Right-handed 310
Helix 7	AA7	A	377	380	Right-handed 310
Helix 8	AA8	A	430	438	Right-handed alpha
Helix 9	AA9	A	446	450	Right-handed alpha
Helix 10	AB1	A	483	487	Right-handed 310
Helix 11	AB2	A	536	540	Right-handed 310
Helix 12	AB3	A	547	561	Right-handed alpha
Helix 13	AB4	A	567	573	Right-handed alpha
Helix 14	AB5	A	573	589	Right-handed alpha
Helix 15	AB6	A	597	608	Right-handed alpha
Helix 16	AB7	B	85	97	Right-handed alpha
Helix 17	AB8	B	97	104	Right-handed alpha
Helix 18	AB9	B	176	189	Right-handed alpha
Helix 19	AC1	B	192	200	Right-handed alpha
Helix 20	AC2	B	218	223	Right-handed alpha
Helix 21	AC3	B	376	380	Right-handed 310
Helix 22	AC4	B	430	438	Right-handed alpha
Helix 23	AC5	B	446	450	Right-handed alpha
Helix 24	AC6	B	483	487	Right-handed 310
Helix 25	AC7	B	536	540	Right-handed 310
Helix 26	AC8	B	547	561	Right-handed alpha
Helix 27	AC9	B	567	573	Right-handed alpha
Helix 28	AD1	B	573	591	Right-handed alpha
Helix 29	AD2	C	45	58	Right-handed alpha
Helix 30	AD3	C	67	71	Right-handed 310
Helix 31	AD4	C	85	97	Right-handed alpha
Helix 32	AD5	C	97	104	Right-handed alpha
Helix 33	AD6	C	176	189	Right-handed alpha
Helix 34	AD7	C	192	200	Right-handed alpha
Helix 35	AD8	C	218	223	Right-handed alpha
Helix 36	AD9	C	430	435	Right-handed alpha
Helix 37	AE1	C	446	450	Right-handed alpha
Helix 38	AE2	C	534	540	Right-handed 310
Helix 39	AE3	C	547	561	Right-handed alpha
Helix 40	AE4	C	567	573	Right-handed alpha
Helix 41	AE5	C	573	588	Right-handed alpha
Helix 42	AE6	C	594	604	Right-handed alpha
Helix 43	AE7	C	628	643	Right-handed alpha
Helix 44	AE8	D	45	58	Right-handed alpha
Helix 45	AE9	D	67	71	Right-handed 310
Helix 46	AF1	D	85	97	Right-handed alpha
Helix 47	AF2	D	97	105	Right-handed alpha
Helix 48	AF3	D	176	190	Right-handed alpha
Helix 49	AF4	D	192	200	Right-handed alpha
Helix 50	AF5	D	218	223	Right-handed alpha
Helix 51	AF6	D	377	380	Right-handed 310
Helix 52	AF7	D	430	438	Right-handed alpha
Helix 53	AF8	D	446	450	Right-handed alpha
Helix 54	AF9	D	536	540	Right-handed 310
Helix 55	AG1	D	547	561	Right-handed alpha
Helix 56	AG2	D	566	573	Right-handed alpha
Helix 57	AG3	D	573	588	Right-handed alpha
Helix 58	AG4	D	628	642	Right-handed alpha

There are 32 sheets in PDB entry 8AAY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	541	542	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	134	first strand
Strand 2	A	517	528	anti-parallel
Strand 3	A	237	250	anti-parallel
Strand 4	A	467	468	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	134	first strand
Strand 2	A	517	528	anti-parallel
Strand 3	A	237	250	anti-parallel
Strand 4	A	451	455	anti-parallel
Strand 5	A	564	566	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	211	217	anti-parallel
Strand 3	A	162	169	anti-parallel
Strand 4	A	149	156	anti-parallel
Strand 5	A	504	513	anti-parallel
Strand 6	A	259	265	anti-parallel
Strand 7	A	442	445	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	273	first strand
Strand 2	A	420	425	anti-parallel
Strand 3	A	473	478	parallel
Strand 4	A	494	495	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	413	415	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	319	first strand
Strand 2	A	325	329	anti-parallel
Strand 3	A	297	301	anti-parallel
Strand 4	A	283	290	anti-parallel
Strand 5	A	401	410	anti-parallel
Strand 6	A	349	353	anti-parallel
Strand 7	A	358	363	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	342	first strand
Strand 2	A	368	375	anti-parallel
Strand 3	A	382	387	anti-parallel
Strand 4	A	392	397	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	468	first strand
Strand 2	B	237	242	anti-parallel
Strand 3	B	517	529	anti-parallel
Strand 4	B	121	133	anti-parallel
Strand 5	B	541	542	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	468	first strand
Strand 2	B	237	242	anti-parallel
Strand 3	B	517	529	anti-parallel
Strand 4	B	244	250	anti-parallel
Strand 5	B	451	455	anti-parallel
Strand 6	B	564	566	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	211	217	anti-parallel
Strand 3	B	162	169	anti-parallel
Strand 4	B	149	156	anti-parallel
Strand 5	B	504	513	anti-parallel
Strand 6	B	259	265	anti-parallel
Strand 7	B	442	445	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	273	first strand
Strand 2	B	420	425	anti-parallel
Strand 3	B	473	478	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	279	first strand
Strand 2	B	414	415	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	319	first strand
Strand 2	B	325	329	anti-parallel
Strand 3	B	297	301	anti-parallel
Strand 4	B	286	289	anti-parallel
Strand 5	B	405	406	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	342	first strand
Strand 2	B	368	374	anti-parallel
Strand 3	B	382	387	anti-parallel
Strand 4	B	392	397	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	363	first strand
Strand 2	B	349	353	anti-parallel
Strand 3	B	408	410	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	81	82	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	468	first strand
Strand 2	C	237	250	anti-parallel
Strand 3	C	517	529	anti-parallel
Strand 4	C	121	133	anti-parallel
Strand 5	C	541	542	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	468	first strand
Strand 2	C	237	250	anti-parallel
Strand 3	C	451	455	anti-parallel
Strand 4	C	564	566	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	217	first strand
Strand 2	C	162	169	anti-parallel
Strand 3	C	149	156	anti-parallel
Strand 4	C	504	513	anti-parallel
Strand 5	C	259	265	anti-parallel
Strand 6	C	441	445	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	283	first strand
Strand 2	C	408	415	anti-parallel
Strand 3	C	349	353	anti-parallel
Strand 4	C	358	363	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	319	first strand
Strand 2	C	325	328	anti-parallel
Strand 3	C	298	301	anti-parallel
Strand 4	C	286	289	anti-parallel
Strand 5	C	405	406	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	342	first strand
Strand 2	C	368	374	anti-parallel
Strand 3	C	382	387	anti-parallel
Strand 4	C	392	397	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	425	first strand
Strand 2	C	473	478	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	133	first strand
Strand 2	D	517	528	anti-parallel
Strand 3	D	237	250	anti-parallel
Strand 4	D	121	124	first strand
Strand 5	D	541	542	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	467	468	first strand
Strand 2	D	237	250	anti-parallel
Strand 3	D	517	528	anti-parallel
Strand 4	D	451	455	first strand
Strand 5	D	564	565	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	204	first strand
Strand 2	D	211	216	anti-parallel
Strand 3	D	164	169	anti-parallel
Strand 4	D	149	156	anti-parallel
Strand 5	D	504	513	anti-parallel
Strand 6	D	259	265	anti-parallel
Strand 7	D	442	445	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	279	first strand
Strand 2	D	414	415	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	283	first strand
Strand 2	D	408	410	anti-parallel
Strand 3	D	349	353	anti-parallel
Strand 4	D	358	363	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	319	first strand
Strand 2	D	325	329	anti-parallel
Strand 3	D	297	301	anti-parallel
Strand 4	D	286	289	anti-parallel
Strand 5	D	405	406	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	342	first strand
Strand 2	D	368	375	anti-parallel
Strand 3	D	382	387	anti-parallel
Strand 4	D	392	397	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	421	425	first strand
Strand 2	D	474	478	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AAY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AAY