Analysis of interatomic Contacts of Structural Units in PDB entry:
8ABF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ABF entry

There are 20 chains in PDB entry 8ABF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	LEU 383
P	GLY 39	ILE 224
G	ALA 2	VAL 125
F	PRO 76	LEU 146
A	VAL 26	TRP 474
B	PHE 15	LEU 416
D	MET 85	PRO 328
H	TYR 9	LEU 93
I	ALA 4	TYR 57
J	TYR 8	PHE 82
N	MET 1	LEU 383
E	GLY 39	ALA 99
R	ALA 2	VAL 125
Q	PRO 76	LEU 146
L	VAL 26	TRP 474
M	PHE 15	LEU 416
O	MET 85	PRO 328
S	TYR 9	LEU 93
T	ALA 4	TYR 57
U	TYR 8	PHE 82

There are196 helices in PDB entry 8ABF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	2	7	Right-handed alpha
Helix 2	AA2	C	7	18	Right-handed alpha
Helix 3	AA3	C	27	30	Right-handed 310
Helix 4	AA4	C	31	52	Right-handed alpha
Helix 5	AA5	C	60	71	Right-handed alpha
Helix 6	AA6	C	74	103	Right-handed alpha
Helix 7	AA7	C	110	134	Right-handed alpha
Helix 8	AA8	C	137	149	Right-handed alpha
Helix 9	AA9	C	150	154	Right-handed 310
Helix 10	AB1	C	157	167	Right-handed alpha
Helix 11	AB2	C	172	202	Right-handed alpha
Helix 12	AB3	C	221	247	Right-handed alpha
Helix 13	AB4	C	253	258	Right-handed 310
Helix 14	AB5	C	272	274	Right-handed 310
Helix 15	AB6	C	275	285	Right-handed alpha
Helix 16	AB7	C	287	301	Right-handed alpha
Helix 17	AB8	C	304	309	Right-handed alpha
Helix 18	AB9	C	319	340	Right-handed alpha
Helix 19	AC1	C	347	365	Right-handed alpha
Helix 20	AC2	C	365	383	Right-handed alpha
Helix 21	AC3	P	58	89	Right-handed alpha
Helix 22	AC4	P	90	92	Right-handed 310
Helix 23	AC5	P	94	100	Right-handed alpha
Helix 24	AC6	P	131	139	Right-handed alpha
Helix 25	AC7	P	151	156	Right-handed alpha
Helix 26	AC8	G	3	17	Right-handed alpha
Helix 27	AC9	G	17	36	Right-handed alpha
Helix 28	AD1	G	37	41	Right-handed 310
Helix 29	AD2	G	43	48	Right-handed 310
Helix 30	AD3	G	52	61	Right-handed alpha
Helix 31	AD4	G	63	84	Right-handed alpha
Helix 32	AD5	G	88	92	Right-handed 310
Helix 33	AD6	G	94	98	Right-handed 310
Helix 34	AD7	G	102	120	Right-handed alpha
Helix 35	AD8	F	77	89	Right-handed alpha
Helix 36	AD9	F	91	111	Right-handed alpha
Helix 37	AE1	F	123	137	Right-handed alpha
Helix 38	AE2	F	138	145	Right-handed alpha
Helix 39	AE3	A	61	65	Right-handed 310
Helix 40	AE4	A	71	80	Right-handed alpha
Helix 41	AE5	A	88	100	Right-handed alpha
Helix 42	AE6	A	122	136	Right-handed alpha
Helix 43	AE7	A	140	155	Right-handed alpha
Helix 44	AE8	A	156	160	Right-handed 310
Helix 45	AE9	A	161	175	Right-handed alpha
Helix 46	AF1	A	178	182	Right-handed 310
Helix 47	AF2	A	187	192	Right-handed alpha
Helix 48	AF3	A	195	207	Right-handed alpha
Helix 49	AF4	A	208	210	Right-handed 310
Helix 50	AF5	A	221	233	Right-handed alpha
Helix 51	AF6	A	293	305	Right-handed alpha
Helix 52	AF7	A	311	317	Right-handed 310
Helix 53	AF8	A	319	328	Right-handed alpha
Helix 54	AF9	A	358	376	Right-handed alpha
Helix 55	AG1	A	378	396	Right-handed alpha
Helix 56	AG2	A	399	414	Right-handed alpha
Helix 57	AG3	A	419	429	Right-handed alpha
Helix 58	AG4	A	431	443	Right-handed alpha
Helix 59	AG5	A	461	468	Right-handed alpha
Helix 60	AG6	B	44	48	Right-handed 310
Helix 61	AG7	B	52	60	Right-handed alpha
Helix 62	AG8	B	69	80	Right-handed alpha
Helix 63	AG9	B	103	118	Right-handed alpha
Helix 64	AH1	B	121	128	Right-handed alpha
Helix 65	AH2	B	128	142	Right-handed alpha
Helix 66	AH3	B	143	158	Right-handed alpha
Helix 67	AH4	B	159	163	Right-handed 310
Helix 68	AH5	B	174	186	Right-handed alpha
Helix 69	AH6	B	187	189	Right-handed 310
Helix 70	AH7	B	199	211	Right-handed alpha
Helix 71	AH8	B	254	264	Right-handed alpha
Helix 72	AH9	B	276	281	Right-handed alpha
Helix 73	AI1	B	310	331	Right-handed alpha
Helix 74	AI2	B	333	354	Right-handed alpha
Helix 75	AI3	B	354	368	Right-handed alpha
Helix 76	AI4	B	374	378	Right-handed 310
Helix 77	AI5	B	382	395	Right-handed alpha
Helix 78	AI6	B	406	410	Right-handed 310
Helix 79	AI7	B	412	416	Right-handed 310
Helix 80	AI8	D	86	91	Right-handed alpha
Helix 81	AI9	D	109	123	Right-handed alpha
Helix 82	AJ1	D	124	127	Right-handed 310
Helix 83	AJ2	D	134	139	Right-handed alpha
Helix 84	AJ3	D	144	154	Right-handed alpha
Helix 85	AJ4	D	184	191	Right-handed alpha
Helix 86	AJ5	D	210	219	Right-handed alpha
Helix 87	AJ6	D	266	283	Right-handed alpha
Helix 88	AJ7	D	285	320	Right-handed alpha
Helix 89	AJ8	H	39	81	Right-handed alpha
Helix 90	AJ9	H	85	93	Right-handed alpha
Helix 91	AK1	I	5	12	Right-handed alpha
Helix 92	AK2	I	14	45	Right-handed alpha
Helix 93	AK3	I	49	54	Right-handed alpha
Helix 94	AK4	I	55	57	Right-handed 310
Helix 95	AK5	J	25	50	Right-handed alpha
Helix 96	AK6	J	53	60	Right-handed alpha
Helix 97	AK7	J	61	64	Right-handed 310
Helix 98	AK8	J	66	72	Right-handed 310
Helix 99	AK9	J	76	80	Right-handed 310
Helix 100	AL1	N	2	7	Right-handed alpha
Helix 101	AL2	N	7	18	Right-handed alpha
Helix 102	AL3	N	27	30	Right-handed 310
Helix 103	AL4	N	31	52	Right-handed alpha
Helix 104	AL5	N	60	71	Right-handed alpha
Helix 105	AL6	N	74	103	Right-handed alpha
Helix 106	AL7	N	110	134	Right-handed alpha
Helix 107	AL8	N	137	149	Right-handed alpha
Helix 108	AL9	N	150	154	Right-handed 310
Helix 109	AM1	N	157	167	Right-handed alpha
Helix 110	AM2	N	172	202	Right-handed alpha
Helix 111	AM3	N	221	247	Right-handed alpha
Helix 112	AM4	N	253	258	Right-handed 310
Helix 113	AM5	N	272	274	Right-handed 310
Helix 114	AM6	N	275	285	Right-handed alpha
Helix 115	AM7	N	287	301	Right-handed alpha
Helix 116	AM8	N	304	309	Right-handed alpha
Helix 117	AM9	N	319	340	Right-handed alpha
Helix 118	AN1	N	347	365	Right-handed alpha
Helix 119	AN2	N	365	383	Right-handed alpha
Helix 120	AN3	E	58	89	Right-handed alpha
Helix 121	AN4	E	90	92	Right-handed 310
Helix 122	AN5	E	94	99	Right-handed alpha
Helix 123	AN6	R	3	17	Right-handed alpha
Helix 124	AN7	R	17	36	Right-handed alpha
Helix 125	AN8	R	37	41	Right-handed 310
Helix 126	AN9	R	43	48	Right-handed 310
Helix 127	AO1	R	52	61	Right-handed alpha
Helix 128	AO2	R	63	83	Right-handed alpha
Helix 129	AO3	R	88	92	Right-handed 310
Helix 130	AO4	R	94	98	Right-handed 310
Helix 131	AO5	R	102	120	Right-handed alpha
Helix 132	AO6	Q	77	89	Right-handed alpha
Helix 133	AO7	Q	91	111	Right-handed alpha
Helix 134	AO8	Q	123	137	Right-handed alpha
Helix 135	AO9	Q	138	145	Right-handed alpha
Helix 136	AP1	L	61	65	Right-handed 310
Helix 137	AP2	L	71	80	Right-handed alpha
Helix 138	AP3	L	88	100	Right-handed alpha
Helix 139	AP4	L	122	136	Right-handed alpha
Helix 140	AP5	L	140	155	Right-handed alpha
Helix 141	AP6	L	157	160	Right-handed 310
Helix 142	AP7	L	161	175	Right-handed alpha
Helix 143	AP8	L	178	182	Right-handed 310
Helix 144	AP9	L	187	192	Right-handed alpha
Helix 145	AQ1	L	195	207	Right-handed alpha
Helix 146	AQ2	L	208	210	Right-handed 310
Helix 147	AQ3	L	221	233	Right-handed alpha
Helix 148	AQ4	L	293	305	Right-handed alpha
Helix 149	AQ5	L	311	317	Right-handed 310
Helix 150	AQ6	L	319	328	Right-handed alpha
Helix 151	AQ7	L	358	376	Right-handed alpha
Helix 152	AQ8	L	378	396	Right-handed alpha
Helix 153	AQ9	L	399	414	Right-handed alpha
Helix 154	AR1	L	419	429	Right-handed alpha
Helix 155	AR2	L	431	443	Right-handed alpha
Helix 156	AR3	L	461	468	Right-handed alpha
Helix 157	AR4	M	44	48	Right-handed 310
Helix 158	AR5	M	52	60	Right-handed alpha
Helix 159	AR6	M	69	80	Right-handed alpha
Helix 160	AR7	M	103	118	Right-handed alpha
Helix 161	AR8	M	121	128	Right-handed alpha
Helix 162	AR9	M	128	142	Right-handed alpha
Helix 163	AS1	M	143	158	Right-handed alpha
Helix 164	AS2	M	159	163	Right-handed 310
Helix 165	AS3	M	174	186	Right-handed alpha
Helix 166	AS4	M	187	189	Right-handed 310
Helix 167	AS5	M	199	211	Right-handed alpha
Helix 168	AS6	M	254	264	Right-handed alpha
Helix 169	AS7	M	279	283	Right-handed 310
Helix 170	AS8	M	310	331	Right-handed alpha
Helix 171	AS9	M	333	354	Right-handed alpha
Helix 172	AT1	M	354	367	Right-handed alpha
Helix 173	AT2	M	374	378	Right-handed 310
Helix 174	AT3	M	382	395	Right-handed alpha
Helix 175	AT4	M	406	410	Right-handed 310
Helix 176	AT5	M	412	416	Right-handed 310
Helix 177	AT6	O	86	91	Right-handed alpha
Helix 178	AT7	O	109	123	Right-handed alpha
Helix 179	AT8	O	124	127	Right-handed 310
Helix 180	AT9	O	134	139	Right-handed alpha
Helix 181	AU1	O	144	154	Right-handed alpha
Helix 182	AU2	O	184	191	Right-handed alpha
Helix 183	AU3	O	210	220	Right-handed alpha
Helix 184	AU4	O	266	283	Right-handed alpha
Helix 185	AU5	O	285	320	Right-handed alpha
Helix 186	AU6	S	39	81	Right-handed alpha
Helix 187	AU7	S	85	93	Right-handed alpha
Helix 188	AU8	T	5	12	Right-handed alpha
Helix 189	AU9	T	14	45	Right-handed alpha
Helix 190	AV1	T	49	54	Right-handed alpha
Helix 191	AV2	T	55	57	Right-handed 310
Helix 192	AV3	U	25	50	Right-handed alpha
Helix 193	AV4	U	53	60	Right-handed alpha
Helix 194	AV5	U	61	64	Right-handed 310
Helix 195	AV6	U	66	72	Right-handed 310
Helix 196	AV7	U	76	80	Right-handed 310

There are 21 sheets in PDB entry 8ABF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	218	220	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	103	106	first strand
Strand 2	P	221	224	anti-parallel
Strand 3	P	215	216	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	114	120	first strand
Strand 2	P	123	129	anti-parallel
Strand 3	P	162	165	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	176	177	first strand
Strand 2	P	185	187	anti-parallel
Strand 3	P	192	194	anti-parallel
Strand 4	P	200	202	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	124	first strand
Strand 2	U	14	16	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	40	45	anti-parallel
Strand 3	A	212	218	parallel
Strand 4	A	51	58	anti-parallel
Strand 5	A	112	119	anti-parallel
Strand 6	A	102	107	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	333	340	anti-parallel
Strand 3	A	345	353	anti-parallel
Strand 4	A	278	285	anti-parallel
Strand 5	A	449	454	anti-parallel
Strand 6	A	266	271	parallel
Strand 7	H	24	29	anti-parallel
Strand 8	D	322	325	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	20	first strand
Strand 2	B	23	28	anti-parallel
Strand 3	B	191	196	parallel
Strand 4	B	34	41	anti-parallel
Strand 5	B	93	100	anti-parallel
Strand 6	B	83	88	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	235	first strand
Strand 2	B	400	404	parallel
Strand 3	B	241	249	anti-parallel
Strand 4	B	300	308	anti-parallel
Strand 5	B	287	295	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	158	first strand
Strand 2	D	169	171	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	245	246	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	14	16	first strand
Strand 2	R	122	124	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	19	20	first strand
Strand 2	J	23	24	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	21	23	first strand
Strand 2	N	218	220	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	31	34	first strand
Strand 2	L	40	45	anti-parallel
Strand 3	L	212	218	parallel
Strand 4	L	51	58	anti-parallel
Strand 5	L	112	119	anti-parallel
Strand 6	L	102	107	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	307	308	first strand
Strand 2	L	333	340	anti-parallel
Strand 3	L	345	353	anti-parallel
Strand 4	L	278	285	anti-parallel
Strand 5	L	449	454	anti-parallel
Strand 6	L	266	271	parallel
Strand 7	S	24	29	anti-parallel
Strand 8	O	322	325	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	16	20	first strand
Strand 2	M	23	28	anti-parallel
Strand 3	M	191	196	parallel
Strand 4	M	34	41	anti-parallel
Strand 5	M	93	100	anti-parallel
Strand 6	M	83	88	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	231	235	first strand
Strand 2	M	400	404	parallel
Strand 3	M	241	249	anti-parallel
Strand 4	M	300	308	anti-parallel
Strand 5	M	287	295	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	156	158	first strand
Strand 2	O	169	171	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	236	237	first strand
Strand 2	O	245	246	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	19	20	first strand
Strand 2	U	23	24	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ABF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ABF