Analysis of interatomic Contacts of Structural Units in PDB entry:
8ABS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ABS entry

There is 1 chain in PDB entry 8ABS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 8ASN 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8ABS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
23 29Right-handed alpha
Helix 3
AA3
A
30 41Right-handed alpha
Helix 4
AA4
A
56 65Right-handed alpha
Helix 5
AA5
A
82 86Right-handed 310
Helix 6
AA6
A
89 99Right-handed alpha
Helix 7
AA7
A
100 102Right-handed 310
Helix 8
AA8
A
103 108Right-handed alpha
Helix 9
AA9
A
110 124Right-handed alpha
Helix 10
AB1
A
133 137Right-handed alpha
Helix 11
AB2
A
139 151Right-handed alpha
Helix 12
AB3
A
156 167Right-handed alpha
Helix 13
AB4
A
175 207Right-handed alpha
Helix 14
AB5
A
211 219Right-handed alpha
Helix 15
AB6
A
227 260Right-handed alpha
Helix 16
AB7
A
260 270Right-handed alpha
Helix 17
AB8
A
273 285Right-handed alpha
Helix 18
AB9
A
316 320Right-handed alpha
Helix 19
AC1
A
353 372Right-handed alpha
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There are 4 sheets in PDB entry 8ABS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
311 315parallel
Strand 4
A
290 295anti-parallel
Strand 5
A
70 71anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
397 400anti-parallel
Strand 3
A
374 376anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
224 225anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
304 306anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il