Analysis of interatomic Contacts of Structural Units in PDB entry:
8AC6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AC6 entry

There are 4 chains in PDB entry 8AC6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 75	ASN 608
B	ARG 75	GLY 610
C	PHE 74	GLY 610
D	TRP 77	LEU 611

There are 53 helices in PDB entry 8AC6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	97	Right-handed alpha
Helix 2	AA2	A	99	104	Right-handed alpha
Helix 3	AA3	A	176	189	Right-handed alpha
Helix 4	AA4	A	192	200	Right-handed alpha
Helix 5	AA5	A	218	223	Right-handed alpha
Helix 6	AA6	A	252	256	Right-handed 310
Helix 7	AA7	A	376	380	Right-handed 310
Helix 8	AA8	A	446	450	Right-handed alpha
Helix 9	AA9	A	470	472	Right-handed 310
Helix 10	AB1	A	534	540	Right-handed 310
Helix 11	AB2	A	547	561	Right-handed alpha
Helix 12	AB3	A	570	584	Right-handed alpha
Helix 13	AB4	A	592	606	Right-handed alpha
Helix 14	AB5	B	76	80	Right-handed alpha
Helix 15	AB6	B	85	97	Right-handed alpha
Helix 16	AB7	B	99	104	Right-handed alpha
Helix 17	AB8	B	176	189	Right-handed alpha
Helix 18	AB9	B	192	200	Right-handed alpha
Helix 19	AC1	B	218	224	Right-handed alpha
Helix 20	AC2	B	226	231	Right-handed alpha
Helix 21	AC3	B	377	380	Right-handed 310
Helix 22	AC4	B	430	434	Right-handed 310
Helix 23	AC5	B	446	450	Right-handed alpha
Helix 24	AC6	B	470	472	Right-handed 310
Helix 25	AC7	B	536	540	Right-handed 310
Helix 26	AC8	B	547	561	Right-handed alpha
Helix 27	AC9	B	570	585	Right-handed alpha
Helix 28	AD1	B	586	591	Right-handed 310
Helix 29	AD2	B	592	610	Right-handed alpha
Helix 30	AD3	C	75	79	Right-handed alpha
Helix 31	AD4	C	85	97	Right-handed alpha
Helix 32	AD5	C	97	103	Right-handed alpha
Helix 33	AD6	C	139	146	Right-handed 310
Helix 34	AD7	C	176	189	Right-handed alpha
Helix 35	AD8	C	192	200	Right-handed alpha
Helix 36	AD9	C	218	223	Right-handed alpha
Helix 37	AE1	C	226	231	Right-handed alpha
Helix 38	AE2	C	376	380	Right-handed 310
Helix 39	AE3	C	430	438	Right-handed alpha
Helix 40	AE4	C	446	450	Right-handed alpha
Helix 41	AE5	C	470	472	Right-handed 310
Helix 42	AE6	C	547	561	Right-handed alpha
Helix 43	AE7	C	570	585	Right-handed alpha
Helix 44	AE8	C	592	610	Right-handed alpha
Helix 45	AE9	D	85	97	Right-handed alpha
Helix 46	AF1	D	97	103	Right-handed alpha
Helix 47	AF2	D	176	189	Right-handed alpha
Helix 48	AF3	D	218	224	Right-handed alpha
Helix 49	AF4	D	430	434	Right-handed 310
Helix 50	AF5	D	534	540	Right-handed 310
Helix 51	AF6	D	547	560	Right-handed alpha
Helix 52	AF7	D	570	584	Right-handed alpha
Helix 53	AF8	D	592	609	Right-handed alpha

There are 29 sheets in PDB entry 8AC6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	541	542	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	134	first strand
Strand 2	A	517	526	anti-parallel
Strand 3	A	240	250	anti-parallel
Strand 4	A	453	455	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	216	first strand
Strand 2	A	164	169	anti-parallel
Strand 3	A	149	156	anti-parallel
Strand 4	A	504	513	anti-parallel
Strand 5	A	259	265	anti-parallel
Strand 6	A	442	445	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	467	468	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	422	424	anti-parallel
Strand 3	A	475	477	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	319	first strand
Strand 2	A	325	329	anti-parallel
Strand 3	A	297	301	anti-parallel
Strand 4	A	282	289	anti-parallel
Strand 5	A	404	410	anti-parallel
Strand 6	A	349	352	anti-parallel
Strand 7	A	359	361	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	342	first strand
Strand 2	A	368	374	anti-parallel
Strand 3	A	382	387	anti-parallel
Strand 4	A	393	397	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	133	first strand
Strand 2	B	517	528	anti-parallel
Strand 3	B	121	124	anti-parallel
Strand 4	B	541	542	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	133	first strand
Strand 2	B	517	528	anti-parallel
Strand 3	B	240	250	anti-parallel
Strand 4	B	451	455	anti-parallel
Strand 5	B	564	566	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	217	first strand
Strand 2	B	162	169	anti-parallel
Strand 3	B	149	156	anti-parallel
Strand 4	B	504	513	anti-parallel
Strand 5	B	259	265	anti-parallel
Strand 6	B	442	445	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	238	first strand
Strand 2	B	467	468	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	271	first strand
Strand 2	B	421	425	anti-parallel
Strand 3	B	473	478	parallel
Strand 4	B	495	496	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	409	410	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	B	325	329	anti-parallel
Strand 3	B	297	301	anti-parallel
Strand 4	B	286	289	anti-parallel
Strand 5	B	405	406	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	342	first strand
Strand 2	B	368	375	anti-parallel
Strand 3	B	382	387	anti-parallel
Strand 4	B	392	397	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	122	first strand
Strand 2	C	541	542	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	216	first strand
Strand 2	C	164	169	anti-parallel
Strand 3	C	149	155	anti-parallel
Strand 4	C	504	513	anti-parallel
Strand 5	C	259	265	anti-parallel
Strand 6	C	441	445	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	468	first strand
Strand 2	C	237	239	anti-parallel
Strand 3	C	527	528	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	455	first strand
Strand 2	C	243	250	anti-parallel
Strand 3	C	517	524	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	271	first strand
Strand 2	C	422	425	anti-parallel
Strand 3	C	473	478	parallel
Strand 4	C	494	496	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	280	first strand
Strand 2	C	413	414	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	319	first strand
Strand 2	C	325	328	anti-parallel
Strand 3	C	298	301	anti-parallel
Strand 4	C	283	289	anti-parallel
Strand 5	C	405	410	anti-parallel
Strand 6	C	349	353	anti-parallel
Strand 7	C	358	361	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	342	first strand
Strand 2	C	368	374	anti-parallel
Strand 3	C	382	387	anti-parallel
Strand 4	C	393	397	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	133	first strand
Strand 2	D	517	524	anti-parallel
Strand 3	D	244	250	anti-parallel
Strand 4	D	451	455	anti-parallel
Strand 5	D	564	566	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	216	first strand
Strand 2	D	164	169	anti-parallel
Strand 3	D	149	156	anti-parallel
Strand 4	D	504	513	anti-parallel
Strand 5	D	259	265	anti-parallel
Strand 6	D	442	445	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	283	first strand
Strand 2	D	408	415	anti-parallel
Strand 3	D	349	351	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	328	first strand
Strand 2	D	298	301	anti-parallel
Strand 3	D	286	289	anti-parallel
Strand 4	D	405	406	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	341	first strand
Strand 2	D	369	374	anti-parallel
Strand 3	D	382	387	anti-parallel
Strand 4	D	392	397	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	422	425	first strand
Strand 2	D	475	478	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AC6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AC6