Analysis of interatomic Contacts of Structural Units in PDB entry:
8ACV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ACV entry

There are 2 chains in PDB entry 8ACV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11SER 290
B
 LEU 12SER 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8ACV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 25Right-handed 310
Helix 2
AA2
A
27 34Right-handed alpha
Helix 3
AA3
A
48 62Right-handed alpha
Helix 4
AA4
A
66 69Right-handed 310
Helix 5
AA5
A
96 115Right-handed alpha
Helix 6
AA6
A
119 133Right-handed alpha
Helix 7
AA7
A
165 176Right-handed 310
Helix 8
AA8
A
177 182Right-handed 310
Helix 9
AA9
A
221 235Right-handed alpha
Helix 10
AB1
B
20 25Right-handed 310
Helix 11
AB2
B
27 34Right-handed alpha
Helix 12
AB3
B
48 62Right-handed alpha
Helix 13
AB4
B
66 69Right-handed 310
Helix 14
AB5
B
96 115Right-handed alpha
Helix 15
AB6
B
119 131Right-handed alpha
Helix 16
AB7
B
165 169Right-handed 310
Helix 17
AB8
B
172 176Right-handed 310
Helix 18
AB9
B
177 182Right-handed alpha
Helix 19
AC1
B
220 233Right-handed alpha
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There are 8 sheets in PDB entry 8ACV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
40 44parallel
Strand 3
A
249 252anti-parallel
Strand 4
A
188 195anti-parallel
Strand 5
A
270 279anti-parallel
Strand 6
A
151 155anti-parallel
Strand 7
A
83 85anti-parallel
Strand 8
A
71 72anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
40 44parallel
Strand 3
A
249 252anti-parallel
Strand 4
A
188 195anti-parallel
Strand 5
A
270 279anti-parallel
Strand 6
A
286 289anti-parallel
Strand 7
A
136 137parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 164first strand
Strand 2
A
257 261anti-parallel
Strand 3
A
203 209anti-parallel
Strand 4
A
239 242anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
264 265anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
40 44parallel
Strand 3
B
249 252anti-parallel
Strand 4
B
188 195anti-parallel
Strand 5
B
270 279anti-parallel
Strand 6
B
151 155anti-parallel
Strand 7
B
83 85anti-parallel
Strand 8
B
71 72anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
40 44parallel
Strand 3
B
249 252anti-parallel
Strand 4
B
188 195anti-parallel
Strand 5
B
270 279anti-parallel
Strand 6
B
286 289anti-parallel
Strand 7
B
136 137parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 164first strand
Strand 2
B
257 261anti-parallel
Strand 3
B
203 209anti-parallel
Strand 4
B
239 242anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 200first strand
Strand 2
B
264 265anti-parallel
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