Analysis of interatomic Contacts of Structural Units in PDB entry:
8AD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AD4 entry

There are 2 chains in PDB entry 8AD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 129GLY 407
B
 HIS 128GLY 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 8AD4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
155 158Right-handed 310
Helix 2
AA2
A
180 182Right-handed 310
Helix 3
AA3
A
185 187Right-handed 310
Helix 4
AA4
A
188 195Right-handed alpha
Helix 5
AA5
A
196 199Right-handed 310
Helix 6
AA6
A
243 252Right-handed alpha
Helix 7
AA7
A
284 297Right-handed alpha
Helix 8
AA8
A
313 317Right-handed 310
Helix 9
AA9
A
319 330Right-handed alpha
Helix 10
AB1
A
343 347Right-handed 310
Helix 11
AB2
A
354 363Right-handed alpha
Helix 12
AB3
A
369 373Right-handed 310
Helix 13
AB4
A
380 394Right-handed alpha
Helix 14
AB5
A
397 399Right-handed 310
Helix 15
AB6
B
155 158Right-handed 310
Helix 16
AB7
B
180 182Right-handed 310
Helix 17
AB8
B
185 188Right-handed 310
Helix 18
AB9
B
189 195Right-handed alpha
Helix 19
AC1
B
196 199Right-handed 310
Helix 20
AC2
B
243 251Right-handed alpha
Helix 21
AC3
B
284 298Right-handed alpha
Helix 22
AC4
B
313 317Right-handed 310
Helix 23
AC5
B
319 330Right-handed alpha
Helix 24
AC6
B
343 347Right-handed 310
Helix 25
AC7
B
354 363Right-handed alpha
Helix 26
AC8
B
369 373Right-handed 310
Helix 27
AC9
B
380 394Right-handed alpha
Helix 28
AD1
B
397 399Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 8AD4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 213first strand
Strand 2
A
167 172anti-parallel
Strand 3
A
257 264anti-parallel
Strand 4
A
131 144anti-parallel
Strand 5
A
147 153anti-parallel
Strand 6
A
223 229anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
201 204anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
333 339parallel
Strand 3
A
305 311parallel
Strand 4
A
276 281parallel
Strand 5
A
374 378parallel
Strand 6
A
401 403parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 213first strand
Strand 2
B
167 172anti-parallel
Strand 3
B
257 264anti-parallel
Strand 4
B
131 144anti-parallel
Strand 5
B
147 153anti-parallel
Strand 6
B
223 229anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 178first strand
Strand 2
B
201 204anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 352first strand
Strand 2
B
333 339parallel
Strand 3
B
305 311parallel
Strand 4
B
276 281parallel
Strand 5
B
374 378parallel
Strand 6
B
401 403parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il