Analysis of interatomic Contacts of Structural Units in PDB entry:
8AD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AD9 entry

There are 6 chains in PDB entry 8AD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 94ALA 241
B
 SER -6ALA 238
C
 ALA 3ALA 3
C
 VAL 5VAL 5
D
 ALA 3ALA 3
D
 VAL 5VAL 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8AD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
95 99Right-handed 310
Helix 2
AA2
A
100 117Right-handed alpha
Helix 3
AA3
A
123 133Right-handed alpha
Helix 4
AA4
A
137 146Right-handed alpha
Helix 5
AA5
A
149 157Right-handed alpha
Helix 6
AA6
A
173 190Right-handed alpha
Helix 7
AA7
A
196 208Right-handed alpha
Helix 8
AA8
A
212 217Right-handed alpha
Helix 9
AA9
A
220 230Right-handed alpha
Helix 10
AB1
B
95 99Right-handed 310
Helix 11
AB2
B
100 117Right-handed alpha
Helix 12
AB3
B
123 133Right-handed alpha
Helix 13
AB4
B
137 146Right-handed alpha
Helix 14
AB5
B
149 157Right-handed alpha
Helix 15
AB6
B
173 191Right-handed alpha
Helix 16
AB7
B
196 208Right-handed alpha
Helix 17
AB8
B
212 217Right-handed alpha
Helix 18
AB9
B
220 235Right-handed alpha
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There are no sheets in PDB entry 8AD9
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il