Analysis of interatomic Contacts of Structural Units in PDB entry:
8ADB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ADB entry

There are 2 chains in PDB entry 8ADB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 280ARG 493
B
 MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8ADB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
280 284Right-handed 310
Helix 2
AA2
A
301 306Right-handed alpha
Helix 3
AA3
A
311 325Right-handed alpha
Helix 4
AA4
A
328 332Right-handed 310
Helix 5
AA5
A
333 353Right-handed alpha
Helix 6
AA6
A
368 371Right-handed 310
Helix 7
AA7
A
395 406Right-handed alpha
Helix 8
AA8
A
443 447Right-handed 310
Helix 9
AA9
A
455 467Right-handed alpha
Helix 10
AB1
A
476 484Right-handed alpha
Helix 11
AB2
B
22 35Right-handed alpha
Helix 12
AB3
B
37 39Right-handed 310
Helix 13
AB4
B
56 60Right-handed 310
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There are 4 sheets in PDB entry 8ADB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
450 454anti-parallel
Strand 3
A
436 440anti-parallel
Strand 4
A
424 430anti-parallel
Strand 5
A
415 421anti-parallel
Strand 6
A
485 492anti-parallel
Strand 7
A
373 375anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
450 454anti-parallel
Strand 3
A
436 440anti-parallel
Strand 4
A
424 430anti-parallel
Strand 5
A
415 421anti-parallel
Strand 6
A
485 492anti-parallel
Strand 7
A
391 394anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
365 366anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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