Analysis of interatomic Contacts of Structural Units in PDB entry:
8ADD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ADD entry

There are 2 chains in PDB entry 8ADD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 0GLN 321
A
 THR 323THR 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8ADD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
321 336Right-handed alpha
Helix 2
AA2
A
340 365Right-handed alpha
Helix 3
AA3
A
374 378Right-handed 310
Helix 4
AA4
A
413 417Right-handed alpha
Helix 5
AA5
A
418 422Right-handed 310
Helix 6
AA6
A
475 489Right-handed alpha
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There are 2 sheets in PDB entry 8ADD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 303first strand
Strand 2
A
467 473anti-parallel
Strand 3
A
446 454anti-parallel
Strand 4
A
434 440anti-parallel
Strand 5
A
426 431anti-parallel
Strand 6
A
498 508anti-parallel
Strand 7
A
388 393anti-parallel
Strand 8
A
381 383anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 303first strand
Strand 2
A
467 473anti-parallel
Strand 3
A
446 454anti-parallel
Strand 4
A
434 440anti-parallel
Strand 5
A
426 431anti-parallel
Strand 6
A
498 508anti-parallel
Strand 7
A
397 400anti-parallel
Strand 8
A
411 412parallel
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