Analysis of interatomic Contacts of Structural Units in PDB entry:
8ADG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ADG entry

There are 7 chains in PDB entry 8ADG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	TRP 810
B	ASN 24	ARG 392
C	ARG 30	GLN 87
D	LYS 24	SER 242
E	TYR 28	SER 111
F	TRP 1	ASN 2
F	THR 4	TRP 7

There are 31 helices in PDB entry 8ADG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	69	Right-handed alpha
Helix 3	AA3	A	106	118	Right-handed alpha
Helix 4	AA4	A	129	145	Right-handed alpha
Helix 5	AA5	A	189	194	Right-handed alpha
Helix 6	AA6	A	195	197	Right-handed 310
Helix 7	AA7	A	215	232	Right-handed alpha
Helix 8	AA8	A	280	286	Right-handed alpha
Helix 9	AA9	A	287	289	Right-handed 310
Helix 10	AB1	A	298	314	Right-handed alpha
Helix 11	AB2	A	361	367	Right-handed alpha
Helix 12	AB3	A	378	393	Right-handed alpha
Helix 13	AB4	A	448	452	Right-handed 310
Helix 14	AB5	A	497	500	Right-handed 310
Helix 15	AB6	A	542	552	Right-handed alpha
Helix 16	AB7	A	691	695	Right-handed 310
Helix 17	AB8	A	729	731	Right-handed 310
Helix 18	AB9	C	31	39	Right-handed alpha
Helix 19	AC1	D	31	46	Right-handed alpha
Helix 20	AC2	D	47	62	Right-handed alpha
Helix 21	AC3	D	67	82	Right-handed alpha
Helix 22	AC4	D	84	99	Right-handed alpha
Helix 23	AC5	D	102	104	Right-handed 310
Helix 24	AC6	D	105	121	Right-handed alpha
Helix 25	AC7	D	137	154	Right-handed alpha
Helix 26	AC8	D	159	189	Right-handed alpha
Helix 27	AC9	D	190	205	Right-handed alpha
Helix 28	AD1	D	208	225	Right-handed alpha
Helix 29	AD2	D	227	242	Right-handed alpha
Helix 30	AD3	E	42	46	Right-handed 310
Helix 31	AD4	E	51	59	Right-handed alpha

There are 17 sheets in PDB entry 8ADG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	84	90	parallel
Strand 3	A	72	79	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	162	170	parallel
Strand 3	A	150	158	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	183	first strand
Strand 2	A	253	261	parallel
Strand 3	A	239	247	anti-parallel
Strand 4	B	192	194	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	270	first strand
Strand 2	A	334	343	parallel
Strand 3	A	273	276	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	270	first strand
Strand 2	A	334	343	parallel
Strand 3	A	320	329	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	A	411	420	parallel
Strand 3	A	395	404	anti-parallel

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There are 18 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	5	first strand
Strand 2	A	424	433	anti-parallel
Strand 3	A	802	806	anti-parallel
Strand 4	A	781	792	anti-parallel
Strand 5	A	767	778	anti-parallel
Strand 6	A	733	745	anti-parallel
Strand 7	A	710	720	anti-parallel
Strand 8	A	628	640	anti-parallel
Strand 9	A	608	620	anti-parallel
Strand 10	A	590	600	anti-parallel
Strand 11	A	564	579	anti-parallel
Strand 12	A	523	537	anti-parallel
Strand 13	A	505	518	anti-parallel
Strand 14	A	484	495	anti-parallel
Strand 15	A	466	475	anti-parallel
Strand 16	A	455	462	anti-parallel
Strand 17	A	439	446	anti-parallel
Strand 18	A	424	433	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	50	first strand
Strand 2	B	387	391	anti-parallel
Strand 3	B	377	381	anti-parallel
Strand 4	B	372	374	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	91	96	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	117	first strand
Strand 2	B	122	126	anti-parallel
Strand 3	B	130	134	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	183	186	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	202	first strand
Strand 2	B	206	210	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	226	231	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	260	anti-parallel
Strand 3	B	267	271	anti-parallel
Strand 4	B	277	281	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	295	299	anti-parallel
Strand 3	B	305	309	anti-parallel
Strand 4	B	317	319	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	345	349	anti-parallel
Strand 4	B	356	361	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	64	65	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	87	94	anti-parallel
Strand 4	E	103	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ADG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ADG