Analysis of interatomic Contacts of Structural Units in PDB entry:
8ADK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ADK entry

There are 3 chains in PDB entry 8ADK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 26LYS 549
B
 ASP 26LYS 549
C
 ASP 26THR 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 8ADK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 38Right-handed alpha
Helix 2
AA2
A
109 119Right-handed alpha
Helix 3
AA3
A
123 133Right-handed alpha
Helix 4
AA4
A
134 139Right-handed 310
Helix 5
AA5
A
144 153Right-handed alpha
Helix 6
AA6
A
156 166Right-handed alpha
Helix 7
AA7
A
166 177Right-handed alpha
Helix 8
AA8
A
177 182Right-handed alpha
Helix 9
AA9
A
201 213Right-handed alpha
Helix 10
AB1
A
236 242Right-handed alpha
Helix 11
AB2
A
244 262Right-handed alpha
Helix 12
AB3
A
284 288Right-handed 310
Helix 13
AB4
A
290 294Right-handed 310
Helix 14
AB5
A
297 301Right-handed 310
Helix 15
AB6
A
310 315Right-handed alpha
Helix 16
AB7
A
338 347Right-handed alpha
Helix 17
AB8
A
348 351Right-handed 310
Helix 18
AB9
A
352 357Right-handed alpha
Helix 19
AC1
A
380 384Right-handed 310
Helix 20
AC2
A
416 422Right-handed 310
Helix 21
AC3
A
423 438Right-handed alpha
Helix 22
AC4
A
455 459Right-handed 310
Helix 23
AC5
A
461 477Right-handed alpha
Helix 24
AC6
A
487 504Right-handed alpha
Helix 25
AC7
A
507 523Right-handed alpha
Helix 26
AC8
A
534 546Right-handed alpha
Helix 27
AC9
B
33 38Right-handed alpha
Helix 28
AD1
B
109 119Right-handed alpha
Helix 29
AD2
B
123 133Right-handed alpha
Helix 30
AD3
B
134 139Right-handed 310
Helix 31
AD4
B
144 153Right-handed alpha
Helix 32
AD5
B
156 166Right-handed alpha
Helix 33
AD6
B
166 177Right-handed alpha
Helix 34
AD7
B
177 182Right-handed alpha
Helix 35
AD8
B
201 213Right-handed alpha
Helix 36
AD9
B
236 242Right-handed alpha
Helix 37
AE1
B
244 262Right-handed alpha
Helix 38
AE2
B
284 288Right-handed 310
Helix 39
AE3
B
290 294Right-handed 310
Helix 40
AE4
B
297 301Right-handed 310
Helix 41
AE5
B
310 315Right-handed alpha
Helix 42
AE6
B
338 347Right-handed alpha
Helix 43
AE7
B
348 351Right-handed 310
Helix 44
AE8
B
352 357Right-handed alpha
Helix 45
AE9
B
380 384Right-handed 310
Helix 46
AF1
B
416 422Right-handed 310
Helix 47
AF2
B
423 438Right-handed alpha
Helix 48
AF3
B
455 459Right-handed 310
Helix 49
AF4
B
461 477Right-handed alpha
Helix 50
AF5
B
487 504Right-handed alpha
Helix 51
AF6
B
507 523Right-handed alpha
Helix 52
AF7
B
534 546Right-handed alpha
Helix 53
AF8
C
33 38Right-handed alpha
Helix 54
AF9
C
109 119Right-handed alpha
Helix 55
AG1
C
123 133Right-handed alpha
Helix 56
AG2
C
134 139Right-handed 310
Helix 57
AG3
C
144 153Right-handed alpha
Helix 58
AG4
C
156 166Right-handed alpha
Helix 59
AG5
C
166 177Right-handed alpha
Helix 60
AG6
C
177 182Right-handed alpha
Helix 61
AG7
C
201 213Right-handed alpha
Helix 62
AG8
C
236 241Right-handed alpha
Helix 63
AG9
C
244 262Right-handed alpha
Helix 64
AH1
C
284 288Right-handed 310
Helix 65
AH2
C
290 294Right-handed 310
Helix 66
AH3
C
297 301Right-handed 310
Helix 67
AH4
C
310 315Right-handed alpha
Helix 68
AH5
C
338 347Right-handed alpha
Helix 69
AH6
C
348 351Right-handed 310
Helix 70
AH7
C
352 357Right-handed alpha
Helix 71
AH8
C
380 384Right-handed 310
Helix 72
AH9
C
416 421Right-handed 310
Helix 73
AI1
C
422 438Right-handed alpha
Helix 74
AI2
C
455 459Right-handed 310
Helix 75
AI3
C
461 477Right-handed alpha
Helix 76
AI4
C
487 504Right-handed alpha
Helix 77
AI5
C
507 523Right-handed alpha
Helix 78
AI6
C
534 546Right-handed alpha
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There are 9 sheets in PDB entry 8ADK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
303 306anti-parallel
Strand 3
A
480 483parallel
Strand 4
A
448 451parallel
Strand 5
A
319 324parallel
Strand 6
A
405 410parallel
Strand 7
A
364 369anti-parallel
Strand 8
A
275 282anti-parallel
Strand 9
A
195 200anti-parallel
Strand 10
A
58 60parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
104 108anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 378first strand
Strand 2
A
385 389anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
303 306anti-parallel
Strand 3
B
480 483parallel
Strand 4
B
448 451parallel
Strand 5
B
319 324parallel
Strand 6
B
405 410parallel
Strand 7
B
364 369anti-parallel
Strand 8
B
275 282anti-parallel
Strand 9
B
195 200anti-parallel
Strand 10
B
58 60parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 98first strand
Strand 2
B
104 108anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 378first strand
Strand 2
B
385 389anti-parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 31first strand
Strand 2
C
303 306anti-parallel
Strand 3
C
480 483parallel
Strand 4
C
448 451parallel
Strand 5
C
319 323parallel
Strand 6
C
405 409parallel
Strand 7
C
364 369anti-parallel
Strand 8
C
275 282anti-parallel
Strand 9
C
195 200anti-parallel
Strand 10
C
58 60parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 98first strand
Strand 2
C
104 108anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
375 378first strand
Strand 2
C
385 389anti-parallel
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