Analysis of interatomic Contacts of Structural Units in PDB entry:
8AE1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AE1 entry

There are 3 chains in PDB entry 8AE1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 215	PHE 1167
B	PHE 215	PHE 1167
C	PHE 215	PHE 1167

There are 30 helices in PDB entry 8AE1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	217	252	Right-handed alpha
Helix 2	AA2	A	304	308	Right-handed 310
Helix 3	AA3	A	321	325	Right-handed 310
Helix 4	AA4	A	350	354	Right-handed 310
Helix 5	AA5	A	451	456	Right-handed alpha
Helix 6	AA6	A	591	596	Right-handed alpha
Helix 7	AA7	A	688	693	Right-handed alpha
Helix 8	AA8	A	784	788	Right-handed 310
Helix 9	AA9	A	870	875	Right-handed 310
Helix 10	AB1	A	920	924	Right-handed 310
Helix 11	AB2	B	217	252	Right-handed alpha
Helix 12	AB3	B	304	308	Right-handed 310
Helix 13	AB4	B	321	325	Right-handed 310
Helix 14	AB5	B	350	354	Right-handed 310
Helix 15	AB6	B	451	456	Right-handed alpha
Helix 16	AB7	B	591	596	Right-handed alpha
Helix 17	AB8	B	688	693	Right-handed alpha
Helix 18	AB9	B	784	788	Right-handed 310
Helix 19	AC1	B	870	875	Right-handed 310
Helix 20	AC2	B	920	924	Right-handed 310
Helix 21	AC3	C	217	252	Right-handed alpha
Helix 22	AC4	C	304	308	Right-handed 310
Helix 23	AC5	C	321	325	Right-handed 310
Helix 24	AC6	C	350	354	Right-handed 310
Helix 25	AC7	C	451	456	Right-handed alpha
Helix 26	AC8	C	591	596	Right-handed alpha
Helix 27	AC9	C	688	693	Right-handed alpha
Helix 28	AD1	C	784	788	Right-handed 310
Helix 29	AD2	C	870	875	Right-handed 310
Helix 30	AD3	C	920	924	Right-handed 310

There are 34 sheets in PDB entry 8AE1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	256	first strand
Strand 2	A	392	394	anti-parallel

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There are 29 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	384	first strand
Strand 2	A	259	269	anti-parallel
Strand 3	A	1154	1163	anti-parallel
Strand 4	A	1125	1138	anti-parallel
Strand 5	A	1109	1122	anti-parallel
Strand 6	A	1074	1086	anti-parallel
Strand 7	A	1053	1066	anti-parallel
Strand 8	A	1033	1046	anti-parallel
Strand 9	A	1014	1023	anti-parallel
Strand 10	A	991	1002	anti-parallel
Strand 11	A	977	988	anti-parallel
Strand 12	A	951	960	anti-parallel
Strand 13	A	932	940	anti-parallel
Strand 14	A	849	860	anti-parallel
Strand 15	A	827	843	anti-parallel
Strand 16	A	804	821	anti-parallel
Strand 17	A	789	798	anti-parallel
Strand 18	A	769	778	anti-parallel
Strand 19	A	755	766	anti-parallel
Strand 20	A	671	683	anti-parallel
Strand 21	A	639	647	anti-parallel
Strand 22	A	618	630	anti-parallel
Strand 23	A	603	615	anti-parallel
Strand 24	A	578	588	anti-parallel
Strand 25	A	562	571	anti-parallel
Strand 26	A	541	549	anti-parallel
Strand 27	A	520	528	anti-parallel
Strand 28	A	495	500	anti-parallel
Strand 29	A	488	490	anti-parallel

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There are 15 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	389	first strand
Strand 2	A	259	269	anti-parallel
Strand 3	A	1154	1163	anti-parallel
Strand 4	A	1125	1138	anti-parallel
Strand 5	A	1109	1122	anti-parallel
Strand 6	A	1074	1086	anti-parallel
Strand 7	A	1053	1066	anti-parallel
Strand 8	A	1033	1046	anti-parallel
Strand 9	A	1014	1023	anti-parallel
Strand 10	A	991	1002	anti-parallel
Strand 11	A	977	988	anti-parallel
Strand 12	A	951	960	anti-parallel
Strand 13	A	932	940	anti-parallel
Strand 14	A	849	860	anti-parallel
Strand 15	A	863	864	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	346	first strand
Strand 2	A	334	338	anti-parallel
Strand 3	A	371	373	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	400	403	anti-parallel
Strand 3	C	1165	1166	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	428	first strand
Strand 2	A	478	481	anti-parallel
Strand 3	C	473	476	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	438	first strand
Strand 2	C	465	467	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	467	first strand
Strand 2	B	436	438	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	476	first strand
Strand 2	B	478	481	anti-parallel
Strand 3	B	426	428	anti-parallel
Strand 4	B	391	394	anti-parallel
Strand 5	B	254	256	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	506	first strand
Strand 2	A	513	514	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	725	729	first strand
Strand 2	A	748	752	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	880	first strand
Strand 2	A	891	892	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	962	963	first strand
Strand 2	A	971	972	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1088	1091	first strand
Strand 2	A	1101	1104	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1165	1166	first strand
Strand 2	B	400	403	anti-parallel
Strand 3	B	418	420	anti-parallel

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There are 29 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	384	first strand
Strand 2	B	259	269	anti-parallel
Strand 3	B	1154	1163	anti-parallel
Strand 4	B	1125	1138	anti-parallel
Strand 5	B	1109	1122	anti-parallel
Strand 6	B	1074	1086	anti-parallel
Strand 7	B	1053	1066	anti-parallel
Strand 8	B	1033	1046	anti-parallel
Strand 9	B	1014	1023	anti-parallel
Strand 10	B	991	1002	anti-parallel
Strand 11	B	977	988	anti-parallel
Strand 12	B	951	960	anti-parallel
Strand 13	B	932	940	anti-parallel
Strand 14	B	849	860	anti-parallel
Strand 15	B	827	843	anti-parallel
Strand 16	B	804	821	anti-parallel
Strand 17	B	789	798	anti-parallel
Strand 18	B	769	778	anti-parallel
Strand 19	B	755	766	anti-parallel
Strand 20	B	671	683	anti-parallel
Strand 21	B	639	647	anti-parallel
Strand 22	B	618	630	anti-parallel
Strand 23	B	603	615	anti-parallel
Strand 24	B	578	588	anti-parallel
Strand 25	B	562	571	anti-parallel
Strand 26	B	541	549	anti-parallel
Strand 27	B	520	528	anti-parallel
Strand 28	B	495	500	anti-parallel
Strand 29	B	488	490	anti-parallel

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There are 15 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	389	first strand
Strand 2	B	259	269	anti-parallel
Strand 3	B	1154	1163	anti-parallel
Strand 4	B	1125	1138	anti-parallel
Strand 5	B	1109	1122	anti-parallel
Strand 6	B	1074	1086	anti-parallel
Strand 7	B	1053	1066	anti-parallel
Strand 8	B	1033	1046	anti-parallel
Strand 9	B	1014	1023	anti-parallel
Strand 10	B	991	1002	anti-parallel
Strand 11	B	977	988	anti-parallel
Strand 12	B	951	960	anti-parallel
Strand 13	B	932	940	anti-parallel
Strand 14	B	849	860	anti-parallel
Strand 15	B	863	864	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	334	338	anti-parallel
Strand 3	B	371	373	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	465	467	first strand
Strand 2	C	436	438	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	476	first strand
Strand 2	C	478	483	anti-parallel
Strand 3	C	423	428	anti-parallel
Strand 4	C	391	394	anti-parallel
Strand 5	C	254	256	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	506	first strand
Strand 2	B	513	514	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	729	first strand
Strand 2	B	748	752	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	879	880	first strand
Strand 2	B	891	892	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	962	963	first strand
Strand 2	B	971	972	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1088	1091	first strand
Strand 2	B	1101	1104	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1165	1166	first strand
Strand 2	C	400	403	anti-parallel
Strand 3	C	418	420	anti-parallel

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There are 29 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	384	first strand
Strand 2	C	259	269	anti-parallel
Strand 3	C	1154	1163	anti-parallel
Strand 4	C	1125	1138	anti-parallel
Strand 5	C	1109	1122	anti-parallel
Strand 6	C	1074	1086	anti-parallel
Strand 7	C	1053	1066	anti-parallel
Strand 8	C	1033	1046	anti-parallel
Strand 9	C	1014	1023	anti-parallel
Strand 10	C	991	1002	anti-parallel
Strand 11	C	977	988	anti-parallel
Strand 12	C	951	960	anti-parallel
Strand 13	C	932	940	anti-parallel
Strand 14	C	849	860	anti-parallel
Strand 15	C	827	843	anti-parallel
Strand 16	C	804	821	anti-parallel
Strand 17	C	789	798	anti-parallel
Strand 18	C	769	778	anti-parallel
Strand 19	C	755	766	anti-parallel
Strand 20	C	671	683	anti-parallel
Strand 21	C	639	647	anti-parallel
Strand 22	C	618	630	anti-parallel
Strand 23	C	603	615	anti-parallel
Strand 24	C	578	588	anti-parallel
Strand 25	C	562	571	anti-parallel
Strand 26	C	541	549	anti-parallel
Strand 27	C	520	528	anti-parallel
Strand 28	C	495	500	anti-parallel
Strand 29	C	488	490	anti-parallel

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There are 15 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	389	first strand
Strand 2	C	259	269	anti-parallel
Strand 3	C	1154	1163	anti-parallel
Strand 4	C	1125	1138	anti-parallel
Strand 5	C	1109	1122	anti-parallel
Strand 6	C	1074	1086	anti-parallel
Strand 7	C	1053	1066	anti-parallel
Strand 8	C	1033	1046	anti-parallel
Strand 9	C	1014	1023	anti-parallel
Strand 10	C	991	1002	anti-parallel
Strand 11	C	977	988	anti-parallel
Strand 12	C	951	960	anti-parallel
Strand 13	C	932	940	anti-parallel
Strand 14	C	849	860	anti-parallel
Strand 15	C	863	864	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	346	first strand
Strand 2	C	334	338	anti-parallel
Strand 3	C	371	373	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	513	514	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	725	729	first strand
Strand 2	C	748	752	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	879	880	first strand
Strand 2	C	891	892	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	962	963	first strand
Strand 2	C	971	972	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1088	1091	first strand
Strand 2	C	1101	1104	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AE1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AE1