Analysis of interatomic Contacts of Structural Units in PDB entry:
8AE5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AE5 entry

There are 8 chains in PDB entry 8AE5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 26	THR 146
A	HIS 148	ALA 188
A	GLU 190	ARG 288
C	GLY 2	GLU 169
B	GLY 26	THR 146
B	HIS 148	ALA 188
B	GLU 190	ARG 288
D	GLY 2	GLU 169

There are 27 helices in PDB entry 8AE5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	41	Right-handed 310
Helix 2	AA2	A	42	59	Right-handed alpha
Helix 3	AA3	A	62	64	Right-handed 310
Helix 4	AA4	A	104	108	Right-handed 310
Helix 5	AA5	A	109	119	Right-handed alpha
Helix 6	AA6	A	121	125	Right-handed 310
Helix 7	AA7	A	163	176	Right-handed alpha
Helix 8	AA8	A	190	195	Right-handed 310
Helix 9	AA9	A	232	242	Right-handed alpha
Helix 10	AB1	A	250	262	Right-handed alpha
Helix 11	AB2	A	273	279	Right-handed 310
Helix 12	AB3	A	280	285	Right-handed alpha
Helix 13	AB4	C	58	61	Right-handed 310
Helix 14	AB5	C	95	103	Right-handed alpha
Helix 15	AB6	B	39	41	Right-handed 310
Helix 16	AB7	B	42	59	Right-handed alpha
Helix 17	AB8	B	62	64	Right-handed 310
Helix 18	AB9	B	104	108	Right-handed 310
Helix 19	AC1	B	109	119	Right-handed alpha
Helix 20	AC2	B	121	125	Right-handed 310
Helix 21	AC3	B	163	176	Right-handed alpha
Helix 22	AC4	B	190	195	Right-handed 310
Helix 23	AC5	B	232	244	Right-handed alpha
Helix 24	AC6	B	250	262	Right-handed alpha
Helix 25	AC7	B	273	279	Right-handed 310
Helix 26	AC8	B	280	285	Right-handed alpha
Helix 27	AC9	D	95	103	Right-handed alpha

There are 12 sheets in PDB entry 8AE5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	29	35	parallel
Strand 3	A	140	146	parallel
Strand 4	A	181	186	parallel
Strand 5	A	204	208	parallel
Strand 6	A	268	271	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	153	155	anti-parallel
Strand 3	A	160	162	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	222	first strand
Strand 2	A	227	231	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	C	27	30	anti-parallel
Strand 3	C	6	13	anti-parallel
Strand 4	C	52	56	anti-parallel
Strand 5	C	64	69	anti-parallel
Strand 6	C	108	112	anti-parallel
Strand 7	C	120	127	anti-parallel
Strand 8	C	132	140	anti-parallel
Strand 9	C	143	151	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	C	27	30	anti-parallel
Strand 3	C	6	13	anti-parallel
Strand 4	C	161	166	anti-parallel
Strand 5	C	120	127	anti-parallel
Strand 6	C	132	140	anti-parallel
Strand 7	C	143	151	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	92	94	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	69	first strand
Strand 2	B	29	35	parallel
Strand 3	B	140	146	parallel
Strand 4	B	181	186	parallel
Strand 5	B	204	208	parallel
Strand 6	B	268	271	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	153	155	anti-parallel
Strand 3	B	160	162	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	222	first strand
Strand 2	B	227	231	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	42	first strand
Strand 2	D	27	30	anti-parallel
Strand 3	D	6	13	anti-parallel
Strand 4	D	51	56	anti-parallel
Strand 5	D	64	69	anti-parallel
Strand 6	D	108	112	anti-parallel
Strand 7	D	120	127	anti-parallel
Strand 8	D	131	140	anti-parallel
Strand 9	D	143	152	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	42	first strand
Strand 2	D	27	30	anti-parallel
Strand 3	D	6	13	anti-parallel
Strand 4	D	161	166	anti-parallel
Strand 5	D	120	127	anti-parallel
Strand 6	D	131	140	anti-parallel
Strand 7	D	143	152	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	92	94	anti-parallel
Strand 3	D	79	81	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AE5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AE5