Analysis of interatomic Contacts of Structural Units in PDB entry:
8AE6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AE6 entry

There are 4 chains in PDB entry 8AE6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
U	GLU 3	TRP 1146
Q	GLY 8	GLU 539
W	ILE 99	THR 1578
S	GLY 7	SER 615

There are 83 helices in PDB entry 8AE6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	U	33	39	Right-handed alpha
Helix 2	AA2	U	365	376	Right-handed alpha
Helix 3	AA3	U	382	387	Right-handed 310
Helix 4	AA4	U	401	409	Right-handed alpha
Helix 5	AA5	U	526	530	Right-handed alpha
Helix 6	AA6	U	545	557	Right-handed alpha
Helix 7	AA7	U	557	573	Right-handed alpha
Helix 8	AA8	U	573	591	Right-handed alpha
Helix 9	AA9	U	593	598	Right-handed alpha
Helix 10	AB1	U	601	617	Right-handed alpha
Helix 11	AB2	U	618	632	Right-handed alpha
Helix 12	AB3	U	678	683	Right-handed alpha
Helix 13	AB4	U	743	747	Right-handed 310
Helix 14	AB5	U	754	763	Right-handed alpha
Helix 15	AB6	U	764	766	Right-handed 310
Helix 16	AB7	U	770	782	Right-handed alpha
Helix 17	AB8	U	788	792	Right-handed 310
Helix 18	AB9	U	793	798	Right-handed alpha
Helix 19	AC1	U	815	831	Right-handed alpha
Helix 20	AC2	U	889	902	Right-handed alpha
Helix 21	AC3	U	907	915	Right-handed alpha
Helix 22	AC4	U	922	926	Right-handed 310
Helix 23	AC5	U	932	946	Right-handed alpha
Helix 24	AC6	U	961	975	Right-handed alpha
Helix 25	AC7	U	1080	1091	Right-handed alpha
Helix 26	AC8	U	1095	1105	Right-handed alpha
Helix 27	AC9	U	1114	1123	Right-handed alpha
Helix 28	AD1	U	1125	1136	Right-handed alpha
Helix 29	AD2	Q	267	271	Right-handed 310
Helix 30	AD3	Q	341	348	Right-handed alpha
Helix 31	AD4	Q	401	407	Right-handed alpha
Helix 32	AD5	Q	429	441	Right-handed alpha
Helix 33	AD6	Q	503	523	Right-handed alpha
Helix 34	AD7	Q	529	537	Right-handed alpha
Helix 35	AD8	W	160	167	Right-handed alpha
Helix 36	AD9	W	177	184	Right-handed alpha
Helix 37	AE1	W	199	203	Right-handed 310
Helix 38	AE2	W	217	228	Right-handed alpha
Helix 39	AE3	W	286	290	Right-handed 310
Helix 40	AE4	W	298	306	Right-handed alpha
Helix 41	AE5	W	307	319	Right-handed alpha
Helix 42	AE6	W	338	342	Right-handed 310
Helix 43	AE7	W	366	386	Right-handed alpha
Helix 44	AE8	W	408	418	Right-handed alpha
Helix 45	AE9	W	419	421	Right-handed 310
Helix 46	AF1	W	449	461	Right-handed alpha
Helix 47	AF2	W	522	527	Right-handed alpha
Helix 48	AF3	W	552	563	Right-handed alpha
Helix 49	AF4	W	859	866	Right-handed alpha
Helix 50	AF5	W	887	891	Right-handed alpha
Helix 51	AF6	W	904	909	Right-handed alpha
Helix 52	AF7	W	931	947	Right-handed alpha
Helix 53	AF8	W	954	961	Right-handed alpha
Helix 54	AF9	W	1053	1063	Right-handed alpha
Helix 55	AG1	W	1090	1094	Right-handed 310
Helix 56	AG2	W	1104	1122	Right-handed alpha
Helix 57	AG3	W	1151	1159	Right-handed alpha
Helix 58	AG4	W	1387	1405	Right-handed alpha
Helix 59	AG5	W	1416	1423	Right-handed 310
Helix 60	AG6	W	1446	1453	Right-handed alpha
Helix 61	AG7	W	1455	1465	Right-handed alpha
Helix 62	AG8	W	1551	1560	Right-handed alpha
Helix 63	AG9	W	1561	1578	Right-handed alpha
Helix 64	AH1	S	34	39	Right-handed alpha
Helix 65	AH2	S	46	51	Right-handed alpha
Helix 66	AH3	S	82	84	Right-handed 310
Helix 67	AH4	S	104	123	Right-handed alpha
Helix 68	AH5	S	123	128	Right-handed alpha
Helix 69	AH6	S	196	211	Right-handed alpha
Helix 70	AH7	S	260	267	Right-handed alpha
Helix 71	AH8	S	268	270	Right-handed 310
Helix 72	AH9	S	275	283	Right-handed alpha
Helix 73	AI1	S	286	300	Right-handed alpha
Helix 74	AI2	S	320	325	Right-handed 310
Helix 75	AI3	S	329	339	Right-handed alpha
Helix 76	AI4	S	345	349	Right-handed 310
Helix 77	AI5	S	434	444	Right-handed alpha
Helix 78	AI6	S	450	458	Right-handed alpha
Helix 79	AI7	S	459	465	Right-handed alpha
Helix 80	AI8	S	468	479	Right-handed alpha
Helix 81	AI9	S	569	582	Right-handed alpha
Helix 82	AJ1	S	585	594	Right-handed alpha
Helix 83	AJ2	S	596	608	Right-handed alpha

There are 31 sheets in PDB entry 8AE6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	13	first strand
Strand 2	U	537	539	anti-parallel
Strand 3	U	427	430	anti-parallel
Strand 4	U	422	424	anti-parallel
Strand 5	S	61	65	anti-parallel
Strand 6	S	68	78	anti-parallel
Strand 7	S	86	96	anti-parallel
Strand 8	S	13	20	anti-parallel
Strand 9	S	24	31	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	23	25	first strand
Strand 2	U	16	18	anti-parallel
Strand 3	U	532	534	anti-parallel
Strand 4	U	434	435	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	636	640	first strand
Strand 2	U	644	648	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	655	656	first strand
Strand 2	U	672	673	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	748	751	first strand
Strand 2	U	834	837	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	846	848	first strand
Strand 2	U	949	951	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	1071	1073	first strand
Strand 2	U	953	960	anti-parallel
Strand 3	U	1140	1145	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	304	312	first strand
Strand 2	Q	323	330	anti-parallel
Strand 3	Q	334	339	anti-parallel
Strand 4	Q	19	22	anti-parallel
Strand 5	Q	411	412	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	29	32	first strand
Strand 2	Q	38	43	anti-parallel
Strand 3	Q	46	51	anti-parallel
Strand 4	Q	60	63	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	73	75	first strand
Strand 2	Q	84	89	anti-parallel
Strand 3	Q	92	97	anti-parallel
Strand 4	Q	106	111	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	117	122	first strand
Strand 2	Q	129	134	anti-parallel
Strand 3	Q	139	143	anti-parallel
Strand 4	Q	152	154	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	161	166	first strand
Strand 2	Q	173	178	anti-parallel
Strand 3	Q	181	186	anti-parallel
Strand 4	Q	193	197	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	204	209	first strand
Strand 2	Q	216	221	anti-parallel
Strand 3	Q	225	230	anti-parallel
Strand 4	Q	240	243	anti-parallel
Strand 5	Q	288	290	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	248	253	first strand
Strand 2	Q	259	264	anti-parallel
Strand 3	Q	272	276	anti-parallel
Strand 4	Q	295	297	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	445	450	first strand
Strand 2	Q	455	462	anti-parallel
Strand 3	Q	473	480	anti-parallel
Strand 4	Q	493	496	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	102	104	first strand
Strand 2	W	191	195	anti-parallel
Strand 3	W	133	137	anti-parallel
Strand 4	W	151	155	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	107	109	first strand
Strand 2	W	173	175	parallel
Strand 3	W	118	119	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	257	258	first strand
Strand 2	W	252	254	anti-parallel
Strand 3	W	206	211	anti-parallel
Strand 4	W	269	274	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	231	234	first strand
Strand 2	W	261	264	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	238	239	first strand
Strand 2	W	247	248	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	400	401	first strand
Strand 2	W	323	333	anti-parallel
Strand 3	W	278	285	parallel
Strand 4	W	434	440	parallel
Strand 5	W	467	471	parallel
Strand 6	W	500	504	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	400	401	first strand
Strand 2	W	323	333	anti-parallel
Strand 3	W	351	363	anti-parallel
Strand 4	W	1028	1030	parallel
Strand 5	W	1038	1039	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	387	389	first strand
Strand 2	W	395	397	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	445	447	first strand
Strand 2	W	482	486	parallel
Strand 3	W	492	497	anti-parallel
Strand 4	W	848	851	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	898	899	first strand
Strand 2	W	949	951	parallel
Strand 3	W	986	989	anti-parallel
Strand 4	W	993	998	anti-parallel
Strand 5	W	1005	1011	anti-parallel
Strand 6	W	913	919	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	1344	1350	first strand
Strand 2	W	1362	1368	anti-parallel
Strand 3	W	1377	1383	anti-parallel
Strand 4	W	1076	1084	anti-parallel
Strand 5	W	1407	1412	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	1340	1342	first strand
Strand 2	W	1485	1487	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	1430	1432	first strand
Strand 2	W	1517	1521	anti-parallel
Strand 3	W	1507	1511	anti-parallel
Strand 4	W	1498	1502	anti-parallel
Strand 5	W	1467	1469	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	213	217	first strand
Strand 2	S	223	227	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	244	247	first strand
Strand 2	S	303	306	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	314	317	first strand
Strand 2	S	482	491	anti-parallel
Strand 3	S	610	615	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AE6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AE6