Analysis of interatomic Contacts of Structural Units in PDB entry:
8AEI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AEI entry

There are 2 chains in PDB entry 8AEI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11ASP 162
B
 GLY 11ARG 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8AEI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed 310
Helix 2
AA2
A
28 33Right-handed 310
Helix 3
AA3
A
123 125Right-handed 310
Helix 4
AA4
A
126 141Right-handed alpha
Helix 5
AA5
A
144 146Right-handed 310
Helix 6
AA6
B
11 16Right-handed 310
Helix 7
AA7
B
28 33Right-handed 310
Helix 8
AA8
B
123 125Right-handed 310
Helix 9
AA9
B
126 141Right-handed alpha
Helix 10
AB1
B
144 146Right-handed 310
Helix 11
AB2
B
152 154Right-handed 310
Helix 12
AB3
B
157 161Right-handed 310
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There are 2 sheets in PDB entry 8AEI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
41 48anti-parallel
Strand 3
A
51 60anti-parallel
Strand 4
A
63 73anti-parallel
Strand 5
A
79 83anti-parallel
Strand 6
A
87 96anti-parallel
Strand 7
A
100 109anti-parallel
Strand 8
A
112 121anti-parallel
Strand 9
A
20 26anti-parallel
Strand 10
A
148 150anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
41 48anti-parallel
Strand 3
B
51 59anti-parallel
Strand 4
B
64 73anti-parallel
Strand 5
B
79 83anti-parallel
Strand 6
B
87 96anti-parallel
Strand 7
B
100 109anti-parallel
Strand 8
B
112 121anti-parallel
Strand 9
B
20 26anti-parallel
Strand 10
B
148 150anti-parallel
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