Analysis of interatomic Contacts of Structural Units in PDB entry:
8AEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AEP entry

There are 2 chains in PDB entry 8AEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 650PHE 1052
B
 GLY 650PHE 1052
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8AEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
650 668Right-handed alpha
Helix 2
AA2
A
694 707Right-handed alpha
Helix 3
AA3
A
721 733Right-handed alpha
Helix 4
AA4
A
757 768Right-handed alpha
Helix 5
AA5
A
783 786Right-handed 310
Helix 6
AA6
A
787 804Right-handed alpha
Helix 7
AA7
A
817 820Right-handed 310
Helix 8
AA8
A
836 840Right-handed 310
Helix 9
AA9
A
842 863Right-handed alpha
Helix 10
AB1
A
888 901Right-handed alpha
Helix 11
AB2
A
918 929Right-handed alpha
Helix 12
AB3
A
936 940Right-handed 310
Helix 13
AB4
A
954 965Right-handed alpha
Helix 14
AB5
A
974 986Right-handed alpha
Helix 15
AB6
A
987 987Right-handed 310
Helix 16
AB7
A
995 999Right-handed 310
Helix 17
AB8
A
1008 1016Right-handed alpha
Helix 18
AB9
A
1022 1029Right-handed alpha
Helix 19
AC1
A
1029 1034Right-handed alpha
Helix 20
AC2
A
1039 1051Right-handed alpha
Helix 21
AC3
B
651 668Right-handed alpha
Helix 22
AC4
B
694 707Right-handed alpha
Helix 23
AC5
B
721 733Right-handed alpha
Helix 24
AC6
B
757 768Right-handed alpha
Helix 25
AC7
B
783 786Right-handed 310
Helix 26
AC8
B
787 804Right-handed alpha
Helix 27
AC9
B
817 820Right-handed 310
Helix 28
AD1
B
836 840Right-handed 310
Helix 29
AD2
B
841 863Right-handed alpha
Helix 30
AD3
B
888 901Right-handed alpha
Helix 31
AD4
B
918 929Right-handed alpha
Helix 32
AD5
B
936 940Right-handed 310
Helix 33
AD6
B
953 965Right-handed alpha
Helix 34
AD7
B
974 986Right-handed alpha
Helix 35
AD8
B
987 987Right-handed 310
Helix 36
AD9
B
995 999Right-handed 310
Helix 37
AE1
B
1008 1016Right-handed alpha
Helix 38
AE2
B
1022 1029Right-handed alpha
Helix 39
AE3
B
1029 1034Right-handed alpha
Helix 40
AE4
B
1039 1051Right-handed alpha
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There are 8 sheets in PDB entry 8AEP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 746first strand
Strand 2
A
710 717parallel
Strand 3
A
685 690parallel
Strand 4
A
770 773parallel
Strand 5
A
810 815parallel
Strand 6
A
866 871parallel
Strand 7
A
943 946parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
874 875first strand
Strand 2
A
916 917parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
902 904first strand
Strand 2
A
971 973parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
912 913first strand
Strand 2
A
952 953anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1001 1007first strand
Strand 2
B
1001 1007anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
742 746first strand
Strand 2
B
710 717parallel
Strand 3
B
685 690parallel
Strand 4
B
770 773parallel
Strand 5
B
810 815parallel
Strand 6
B
866 871parallel
Strand 7
B
943 946parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
874 875first strand
Strand 2
B
916 917parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
902 904first strand
Strand 2
B
971 973parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il