Analysis of interatomic Contacts of Structural Units in PDB entry:
8AF9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AF9 entry

There are 6 chains in PDB entry 8AF9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 17	MET 133
B	ASN 16	MET 133
C	PHE 17	PRO 134
D	ASN 16	MET 133
E	ASP 18	MET 133
F	ASP 18	GLU 87

There are 81 helices in PDB entry 8AF9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	38	Right-handed alpha
Helix 2	AA2	A	54	63	Right-handed alpha
Helix 3	AA3	A	66	71	Right-handed 310
Helix 4	AA4	A	76	79	Right-handed 310
Helix 5	AA5	A	80	97	Right-handed alpha
Helix 6	AA6	A	107	112	Right-handed alpha
Helix 7	AA7	A	123	131	Right-handed alpha
Helix 8	AA8	B	29	38	Right-handed alpha
Helix 9	AA9	B	54	63	Right-handed alpha
Helix 10	AB1	B	76	79	Right-handed 310
Helix 11	AB2	B	80	97	Right-handed alpha
Helix 12	AB3	B	107	112	Right-handed alpha
Helix 13	AB4	B	123	131	Right-handed alpha
Helix 14	AB5	C	29	38	Right-handed alpha
Helix 15	AB6	C	55	63	Right-handed alpha
Helix 16	AB7	C	66	71	Right-handed 310
Helix 17	AB8	C	76	79	Right-handed 310
Helix 18	AB9	C	80	97	Right-handed alpha
Helix 19	AC1	C	107	112	Right-handed alpha
Helix 20	AC2	C	123	131	Right-handed alpha
Helix 21	AC3	D	29	38	Right-handed alpha
Helix 22	AC4	D	55	63	Right-handed alpha
Helix 23	AC5	D	66	71	Right-handed 310
Helix 24	AC6	D	76	79	Right-handed 310
Helix 25	AC7	D	80	97	Right-handed alpha
Helix 26	AC8	D	107	112	Right-handed alpha
Helix 27	AC9	D	123	131	Right-handed alpha
Helix 28	AD1	E	29	38	Right-handed alpha
Helix 29	AD2	E	55	63	Right-handed alpha
Helix 30	AD3	E	66	71	Right-handed 310
Helix 31	AD4	E	76	79	Right-handed 310
Helix 32	AD5	E	80	97	Right-handed alpha
Helix 33	AD6	E	107	112	Right-handed alpha
Helix 34	AD7	E	123	131	Right-handed alpha
Helix 35	AD8	F	29	38	Right-handed alpha
Helix 36	AD9	F	55	63	Right-handed alpha
Helix 37	AE1	F	76	79	Right-handed 310
Helix 38	AE2	F	80	97	Right-handed alpha
Helix 39	AE3	F	107	112	Right-handed alpha
Helix 40	AE4	F	123	131	Right-handed alpha
Helix 41	AE5	G	29	38	Right-handed alpha
Helix 42	AE6	G	54	63	Right-handed alpha
Helix 43	AE7	G	66	71	Right-handed 310
Helix 44	AE8	G	76	79	Right-handed 310
Helix 45	AE9	G	80	97	Right-handed alpha
Helix 46	AF1	G	107	112	Right-handed alpha
Helix 47	AF2	G	123	131	Right-handed alpha
Helix 48	AF3	H	29	38	Right-handed alpha
Helix 49	AF4	H	55	63	Right-handed alpha
Helix 50	AF5	H	66	71	Right-handed 310
Helix 51	AF6	H	76	79	Right-handed 310
Helix 52	AF7	H	80	97	Right-handed alpha
Helix 53	AF8	H	107	112	Right-handed alpha
Helix 54	AF9	H	123	131	Right-handed alpha
Helix 55	AG1	I	29	38	Right-handed alpha
Helix 56	AG2	I	54	63	Right-handed alpha
Helix 57	AG3	I	76	79	Right-handed 310
Helix 58	AG4	I	80	98	Right-handed alpha
Helix 59	AG5	I	107	112	Right-handed alpha
Helix 60	AG6	I	123	131	Right-handed alpha
Helix 61	AG7	J	29	38	Right-handed alpha
Helix 62	AG8	J	55	63	Right-handed alpha
Helix 63	AG9	J	66	71	Right-handed 310
Helix 64	AH1	J	76	79	Right-handed 310
Helix 65	AH2	J	80	97	Right-handed alpha
Helix 66	AH3	J	107	112	Right-handed alpha
Helix 67	AH4	J	123	131	Right-handed alpha
Helix 68	AH5	K	29	38	Right-handed alpha
Helix 69	AH6	K	54	63	Right-handed alpha
Helix 70	AH7	K	66	71	Right-handed 310
Helix 71	AH8	K	76	79	Right-handed 310
Helix 72	AH9	K	80	97	Right-handed alpha
Helix 73	AI1	K	107	112	Right-handed alpha
Helix 74	AI2	K	123	131	Right-handed alpha
Helix 75	AI3	L	29	38	Right-handed alpha
Helix 76	AI4	L	55	63	Right-handed alpha
Helix 77	AI5	L	66	71	Right-handed 310
Helix 78	AI6	L	76	79	Right-handed 310
Helix 79	AI7	L	80	98	Right-handed alpha
Helix 80	AI8	L	107	112	Right-handed alpha
Helix 81	AI9	L	123	131	Right-handed alpha

There are 24 sheets in PDB entry 8AF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	27	28	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	117	122	anti-parallel
Strand 3	A	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	27	28	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	117	122	anti-parallel
Strand 3	B	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	23	first strand
Strand 2	C	27	28	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	54	first strand
Strand 2	C	117	122	anti-parallel
Strand 3	C	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	D	27	28	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	54	first strand
Strand 2	D	117	122	anti-parallel
Strand 3	D	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	23	first strand
Strand 2	E	27	28	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	54	first strand
Strand 2	E	117	122	anti-parallel
Strand 3	E	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	23	first strand
Strand 2	F	27	28	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	54	first strand
Strand 2	F	117	122	anti-parallel
Strand 3	F	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	23	first strand
Strand 2	G	27	28	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	53	first strand
Strand 2	G	117	122	anti-parallel
Strand 3	G	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	23	first strand
Strand 2	H	27	28	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	54	first strand
Strand 2	H	117	122	anti-parallel
Strand 3	H	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	22	23	first strand
Strand 2	I	27	28	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	52	53	first strand
Strand 2	I	117	122	anti-parallel
Strand 3	I	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	22	23	first strand
Strand 2	J	27	28	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	52	54	first strand
Strand 2	J	117	122	anti-parallel
Strand 3	J	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	22	23	first strand
Strand 2	K	27	28	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	52	53	first strand
Strand 2	K	117	122	anti-parallel
Strand 3	K	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	22	23	first strand
Strand 2	L	27	28	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	52	54	first strand
Strand 2	L	117	122	anti-parallel
Strand 3	L	102	105	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AF9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AF9