Analysis of interatomic Contacts of Structural Units in PDB entry:
8AFA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AFA entry

There are 3 chains in PDB entry 8AFA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 16SER 430
B
 TRP 16SER 430
C
 TRP 16SER 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 8AFA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 35Right-handed alpha
Helix 2
AA2
A
37 45Right-handed alpha
Helix 3
AA3
A
45 59Right-handed alpha
Helix 4
AA4
A
59 74Right-handed alpha
Helix 5
AA5
A
76 110Right-handed alpha
Helix 6
AA6
A
131 138Right-handed alpha
Helix 7
AA7
A
143 151Right-handed alpha
Helix 8
AA8
A
152 171Right-handed alpha
Helix 9
AA9
A
175 222Right-handed alpha
Helix 10
AB1
A
228 248Right-handed alpha
Helix 11
AB2
A
250 256Right-handed alpha
Helix 12
AB3
A
259 267Right-handed alpha
Helix 13
AB4
A
267 278Right-handed alpha
Helix 14
AB5
A
283 294Right-handed alpha
Helix 15
AB6
A
298 313Right-handed alpha
Helix 16
AB7
A
314 332Right-handed alpha
Helix 17
AB8
A
339 355Right-handed alpha
Helix 18
AB9
A
360 373Right-handed alpha
Helix 19
AC1
A
382 393Right-handed alpha
Helix 20
AC2
A
393 420Right-handed alpha
Helix 21
AC3
A
424 429Right-handed 310
Helix 22
AC4
B
17 35Right-handed alpha
Helix 23
AC5
B
37 45Right-handed alpha
Helix 24
AC6
B
45 59Right-handed alpha
Helix 25
AC7
B
59 74Right-handed alpha
Helix 26
AC8
B
76 110Right-handed alpha
Helix 27
AC9
B
131 138Right-handed alpha
Helix 28
AD1
B
143 151Right-handed alpha
Helix 29
AD2
B
152 171Right-handed alpha
Helix 30
AD3
B
175 222Right-handed alpha
Helix 31
AD4
B
228 248Right-handed alpha
Helix 32
AD5
B
250 256Right-handed alpha
Helix 33
AD6
B
259 267Right-handed alpha
Helix 34
AD7
B
267 278Right-handed alpha
Helix 35
AD8
B
283 294Right-handed alpha
Helix 36
AD9
B
298 313Right-handed alpha
Helix 37
AE1
B
314 332Right-handed alpha
Helix 38
AE2
B
339 355Right-handed alpha
Helix 39
AE3
B
360 373Right-handed alpha
Helix 40
AE4
B
382 393Right-handed alpha
Helix 41
AE5
B
393 420Right-handed alpha
Helix 42
AE6
B
424 429Right-handed 310
Helix 43
AE7
C
17 35Right-handed alpha
Helix 44
AE8
C
37 45Right-handed alpha
Helix 45
AE9
C
45 59Right-handed alpha
Helix 46
AF1
C
59 74Right-handed alpha
Helix 47
AF2
C
76 110Right-handed alpha
Helix 48
AF3
C
131 138Right-handed alpha
Helix 49
AF4
C
143 151Right-handed alpha
Helix 50
AF5
C
152 171Right-handed alpha
Helix 51
AF6
C
175 222Right-handed alpha
Helix 52
AF7
C
228 248Right-handed alpha
Helix 53
AF8
C
250 256Right-handed alpha
Helix 54
AF9
C
259 267Right-handed alpha
Helix 55
AG1
C
267 278Right-handed alpha
Helix 56
AG2
C
283 294Right-handed alpha
Helix 57
AG3
C
298 313Right-handed alpha
Helix 58
AG4
C
314 332Right-handed alpha
Helix 59
AG5
C
339 355Right-handed alpha
Helix 60
AG6
C
360 373Right-handed alpha
Helix 61
AG7
C
382 393Right-handed alpha
Helix 62
AG8
C
393 420Right-handed alpha
Helix 63
AG9
C
424 429Right-handed 310
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There are no sheets in PDB entry 8AFA
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