Analysis of interatomic Contacts of Structural Units in PDB entry:
8AFG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AFG entry

There are 2 chains in PDB entry 8AFG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8PRO 507
B
 ALA 9ASN 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8AFG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 15Right-handed alpha
Helix 2
AA2
A
26 29Right-handed 310
Helix 3
AA3
A
34 50Right-handed alpha
Helix 4
AA4
A
72 85Right-handed alpha
Helix 5
AA5
A
97 109Right-handed alpha
Helix 6
AA6
A
118 122Right-handed 310
Helix 7
AA7
A
125 135Right-handed alpha
Helix 8
AA8
A
157 160Right-handed 310
Helix 9
AA9
A
169 171Right-handed 310
Helix 10
AB1
A
211 226Right-handed alpha
Helix 11
AB2
A
241 247Right-handed alpha
Helix 12
AB3
A
248 255Right-handed alpha
Helix 13
AB4
A
266 277Right-handed alpha
Helix 14
AB5
A
285 294Right-handed alpha
Helix 15
AB6
A
315 327Right-handed alpha
Helix 16
AB7
A
337 340Right-handed 310
Helix 17
AB8
A
398 406Right-handed alpha
Helix 18
AB9
A
434 436Right-handed 310
Helix 19
AC1
A
445 454Right-handed alpha
Helix 20
AC2
A
490 499Right-handed alpha
Helix 21
AC3
A
502 506Right-handed 310
Helix 22
AC4
B
10 15Right-handed alpha
Helix 23
AC5
B
26 29Right-handed 310
Helix 24
AC6
B
34 50Right-handed alpha
Helix 25
AC7
B
72 84Right-handed alpha
Helix 26
AC8
B
97 109Right-handed alpha
Helix 27
AC9
B
118 122Right-handed 310
Helix 28
AD1
B
125 135Right-handed alpha
Helix 29
AD2
B
157 160Right-handed 310
Helix 30
AD3
B
169 171Right-handed 310
Helix 31
AD4
B
211 226Right-handed alpha
Helix 32
AD5
B
241 247Right-handed alpha
Helix 33
AD6
B
248 255Right-handed alpha
Helix 34
AD7
B
266 277Right-handed alpha
Helix 35
AD8
B
285 294Right-handed alpha
Helix 36
AD9
B
315 327Right-handed alpha
Helix 37
AE1
B
337 340Right-handed 310
Helix 38
AE2
B
398 406Right-handed alpha
Helix 39
AE3
B
434 436Right-handed 310
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There are 11 sheets in PDB entry 8AFG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
21 25anti-parallel
Strand 3
A
258 260parallel
Strand 4
A
232 234parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 92first strand
Strand 2
A
64 68parallel
Strand 3
A
112 116parallel
Strand 4
A
137 144parallel
Strand 5
A
149 155anti-parallel
Strand 6
A
164 167anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 196first strand
Strand 2
A
206 210anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 284first strand
Strand 2
A
306 309parallel
Strand 3
A
330 336parallel
Strand 4
A
341 345anti-parallel
Strand 5
A
360 361anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 369first strand
Strand 2
A
382 387anti-parallel
Strand 3
A
413 421anti-parallel
Strand 4
A
427 432anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 468first strand
Strand 2
A
474 477anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
21 25anti-parallel
Strand 3
B
258 260parallel
Strand 4
B
232 234parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 92first strand
Strand 2
B
64 68parallel
Strand 3
B
112 116parallel
Strand 4
B
137 144parallel
Strand 5
B
149 155anti-parallel
Strand 6
B
164 167anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 196first strand
Strand 2
B
206 210anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 284first strand
Strand 2
B
306 309parallel
Strand 3
B
330 336parallel
Strand 4
B
341 345anti-parallel
Strand 5
B
360 361anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 369first strand
Strand 2
B
382 387anti-parallel
Strand 3
B
413 421anti-parallel
Strand 4
B
427 432anti-parallel
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