Analysis of interatomic Contacts of Structural Units in PDB entry:
8AFI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AFI entry

There are 13 chains in PDB entry 8AFI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLY 116
C
 PHE 3GLY 116
F
 ALA 96TYR 111
H
 ASP 104TYR 111
B
 GLU 95THR 110
J
 GLU 95TYR 111
N
 GLY 103TYR 111
P
 ASP 104THR 110
D
 GLU 93THR 110
L
 ALA 96THR 110
E
 LYS 2GLY 116
G
 PHE 3GLY 116
I
 LYS 2LYS 66
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8AFI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
10 25Right-handed alpha
Helix 3
AA3
A
56 68Right-handed alpha
Helix 4
AA4
A
90 99Right-handed alpha
Helix 5
AA5
C
4 9Right-handed alpha
Helix 6
AA6
C
10 25Right-handed alpha
Helix 7
AA7
C
56 68Right-handed alpha
Helix 8
AA8
C
90 99Right-handed alpha
Helix 9
AA9
J
99 103Right-handed 310
Helix 10
AB1
E
4 9Right-handed alpha
Helix 11
AB2
E
10 25Right-handed alpha
Helix 12
AB3
E
56 68Right-handed alpha
Helix 13
AB4
E
90 99Right-handed alpha
Helix 14
AB5
G
4 9Right-handed alpha
Helix 15
AB6
G
10 25Right-handed alpha
Helix 16
AB7
G
56 68Right-handed alpha
Helix 17
AB8
G
90 99Right-handed alpha
Helix 18
AB9
I
3 9Right-handed alpha
Helix 19
AC1
I
10 25Right-handed alpha
Helix 20
AC2
I
56 68Right-handed alpha
Helix 21
AC3
I
90 99Right-handed alpha
Helix 22
AC4
K
10 25Right-handed alpha
Helix 23
AC5
K
56 68Right-handed alpha
Helix 24
AC6
K
90 99Right-handed alpha
Helix 25
AC7
M
4 9Right-handed alpha
Helix 26
AC8
M
10 25Right-handed alpha
Helix 27
AC9
M
56 68Right-handed alpha
Helix 28
AD1
M
90 99Right-handed alpha
Helix 29
AD2
O
4 9Right-handed alpha
Helix 30
AD3
O
10 25Right-handed alpha
Helix 31
AD4
O
56 68Right-handed alpha
Helix 32
AD5
O
90 99Right-handed alpha
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There are 8 sheets in PDB entry 8AFI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
28 35parallel
Strand 4
A
48 52anti-parallel
Strand 5
B
107 109parallel
Strand 6
B
97 98anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 79first strand
Strand 2
C
105 110anti-parallel
Strand 3
C
28 35parallel
Strand 4
C
48 52anti-parallel
Strand 5
D
108 109parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
97 98first strand
Strand 2
F
107 109anti-parallel
Strand 3
E
48 52parallel
Strand 4
E
28 35anti-parallel
Strand 5
E
105 110parallel
Strand 6
E
77 79anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
97 98first strand
Strand 2
J
107 109anti-parallel
Strand 3
I
48 52parallel
Strand 4
I
28 35anti-parallel
Strand 5
I
105 110parallel
Strand 6
I
77 79anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
97 98first strand
Strand 2
L
107 109anti-parallel
Strand 3
K
48 52parallel
Strand 4
K
28 35anti-parallel
Strand 5
K
105 110parallel
Strand 6
K
77 79anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
48 52first strand
Strand 2
G
28 35anti-parallel
Strand 3
G
105 110parallel
Strand 4
G
77 79anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
48 52first strand
Strand 2
M
28 35anti-parallel
Strand 3
M
105 110parallel
Strand 4
M
77 79anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
48 52first strand
Strand 2
O
28 35anti-parallel
Strand 3
O
105 110parallel
Strand 4
O
77 79anti-parallel
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