Analysis of interatomic Contacts of Structural Units in PDB entry:
8AFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AFK entry

There are 2 chains in PDB entry 8AFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 23GLU 315
B
 GLY 24GLU 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8AFK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 52Right-handed alpha
Helix 2
AA2
A
63 68Right-handed alpha
Helix 3
AA3
A
69 81Right-handed alpha
Helix 4
AA4
A
130 144Right-handed alpha
Helix 5
AA5
A
147 164Right-handed alpha
Helix 6
AA6
A
199 203Right-handed 310
Helix 7
AA7
A
204 212Right-handed alpha
Helix 8
AA8
A
252 262Right-handed alpha
Helix 9
AA9
A
293 314Right-handed alpha
Helix 10
AB1
B
69 81Right-handed alpha
Helix 11
AB2
B
130 144Right-handed alpha
Helix 12
AB3
B
147 164Right-handed alpha
Helix 13
AB4
B
199 203Right-handed 310
Helix 14
AB5
B
204 214Right-handed alpha
Helix 15
AB6
B
252 262Right-handed alpha
Helix 16
AB7
B
293 315Right-handed alpha
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There are 5 sheets in PDB entry 8AFK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
227 230anti-parallel
Strand 3
A
41 45anti-parallel
Strand 4
A
31 36anti-parallel
Strand 5
A
113 119anti-parallel
Strand 6
A
103 110anti-parallel
Strand 7
A
91 93anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
179 186anti-parallel
Strand 3
A
167 173anti-parallel
Strand 4
A
277 286anti-parallel
Strand 5
A
266 274anti-parallel
Strand 6
A
216 219anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
227 230anti-parallel
Strand 3
B
41 45anti-parallel
Strand 4
B
31 35anti-parallel
Strand 5
B
113 119anti-parallel
Strand 6
B
103 110anti-parallel
Strand 7
B
87 88anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
227 230anti-parallel
Strand 3
B
41 45anti-parallel
Strand 4
B
31 35anti-parallel
Strand 5
B
113 119anti-parallel
Strand 6
B
103 110anti-parallel
Strand 7
B
91 92anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
B
179 186anti-parallel
Strand 3
B
167 173anti-parallel
Strand 4
B
277 286anti-parallel
Strand 5
B
266 274anti-parallel
Strand 6
B
216 219anti-parallel
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