Analysis of interatomic Contacts of Structural Units in PDB entry:
8AFO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AFO entry

There is 1 chain in PDB entry 8AFO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 710GLY 916
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 8AFO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
739 743Right-handed 310
Helix 2
AA2
A
837 841Right-handed 310
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There are 5 sheets in PDB entry 8AFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
722 724first strand
Strand 2
A
730 734anti-parallel
Strand 3
A
772 776anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 768first strand
Strand 2
A
749 756anti-parallel
Strand 3
A
783 792anti-parallel
Strand 4
A
795 796anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 768first strand
Strand 2
A
749 756anti-parallel
Strand 3
A
783 792anti-parallel
Strand 4
A
803 806anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
818 825first strand
Strand 2
A
828 833anti-parallel
Strand 3
A
879 882anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
869 874first strand
Strand 2
A
847 856anti-parallel
Strand 3
A
890 898anti-parallel
Strand 4
A
907 912anti-parallel
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