Analysis of interatomic Contacts of Structural Units in PDB entry:
8AFU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AFU entry

There are 2 chains in PDB entry 8AFU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG -4LEU 334
B
 PRO -5LEU 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8AFU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
40 45Right-handed alpha
Helix 3
AA3
A
46 49Right-handed 310
Helix 4
AA4
A
60 68Right-handed alpha
Helix 5
AA5
A
78 90Right-handed alpha
Helix 6
AA6
A
105 114Right-handed alpha
Helix 7
AA7
A
119 126Right-handed alpha
Helix 8
AA8
A
134 140Right-handed alpha
Helix 9
AA9
A
148 164Right-handed alpha
Helix 10
AB1
A
181 184Right-handed 310
Helix 11
AB2
A
188 191Right-handed 310
Helix 12
AB3
A
192 197Right-handed alpha
Helix 13
AB4
A
209 219Right-handed alpha
Helix 14
AB5
A
220 222Right-handed 310
Helix 15
AB6
A
251 263Right-handed alpha
Helix 16
AB7
A
279 283Right-handed 310
Helix 17
AB8
A
313 325Right-handed alpha
Helix 18
AB9
B
10 23Right-handed alpha
Helix 19
AC1
B
40 45Right-handed alpha
Helix 20
AC2
B
46 49Right-handed 310
Helix 21
AC3
B
60 68Right-handed alpha
Helix 22
AC4
B
78 90Right-handed alpha
Helix 23
AC5
B
105 110Right-handed alpha
Helix 24
AC6
B
119 126Right-handed alpha
Helix 25
AC7
B
134 140Right-handed alpha
Helix 26
AC8
B
148 164Right-handed alpha
Helix 27
AC9
B
180 184Right-handed 310
Helix 28
AD1
B
188 191Right-handed 310
Helix 29
AD2
B
192 197Right-handed alpha
Helix 30
AD3
B
209 219Right-handed alpha
Helix 31
AD4
B
220 222Right-handed 310
Helix 32
AD5
B
251 263Right-handed alpha
Helix 33
AD6
B
279 283Right-handed 310
Helix 34
AD7
B
313 325Right-handed alpha
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There are 4 sheets in PDB entry 8AFU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 32first strand
Strand 2
A
1 6parallel
Strand 3
A
70 73parallel
Strand 4
A
93 96parallel
Strand 5
A
143 145parallel
Strand 6
A
127 128parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
228 234anti-parallel
Strand 3
A
173 179parallel
Strand 4
A
240 247anti-parallel
Strand 5
A
299 306anti-parallel
Strand 6
A
289 296anti-parallel
Strand 7
A
269 272parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 32first strand
Strand 2
B
1 6parallel
Strand 3
B
70 73parallel
Strand 4
B
93 96parallel
Strand 5
B
143 145parallel
Strand 6
B
127 128parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 202first strand
Strand 2
B
228 233anti-parallel
Strand 3
B
173 178parallel
Strand 4
B
240 247anti-parallel
Strand 5
B
299 306anti-parallel
Strand 6
B
289 296anti-parallel
Strand 7
B
269 272parallel
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