Analysis of interatomic Contacts of Structural Units in PDB entry:
8AFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AFV entry

There are 4 chains in PDB entry 8AFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 334
B
 MET 1LEU 334
C
 MET 1LEU 334
D
 MET 1LEU 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 8AFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
40 45Right-handed alpha
Helix 3
AA3
A
46 49Right-handed 310
Helix 4
AA4
A
60 68Right-handed alpha
Helix 5
AA5
A
78 90Right-handed alpha
Helix 6
AA6
A
105 114Right-handed alpha
Helix 7
AA7
A
119 124Right-handed alpha
Helix 8
AA8
A
134 140Right-handed alpha
Helix 9
AA9
A
148 164Right-handed alpha
Helix 10
AB1
A
180 184Right-handed 310
Helix 11
AB2
A
188 191Right-handed 310
Helix 12
AB3
A
192 197Right-handed alpha
Helix 13
AB4
A
209 219Right-handed alpha
Helix 14
AB5
A
220 222Right-handed 310
Helix 15
AB6
A
251 263Right-handed alpha
Helix 16
AB7
A
279 284Right-handed alpha
Helix 17
AB8
A
313 325Right-handed alpha
Helix 18
AB9
B
10 22Right-handed alpha
Helix 19
AC1
B
33 37Right-handed 310
Helix 20
AC2
B
40 45Right-handed alpha
Helix 21
AC3
B
46 49Right-handed 310
Helix 22
AC4
B
60 68Right-handed alpha
Helix 23
AC5
B
78 90Right-handed alpha
Helix 24
AC6
B
119 126Right-handed alpha
Helix 25
AC7
B
134 139Right-handed alpha
Helix 26
AC8
B
148 164Right-handed alpha
Helix 27
AC9
B
180 184Right-handed 310
Helix 28
AD1
B
188 191Right-handed 310
Helix 29
AD2
B
192 197Right-handed alpha
Helix 30
AD3
B
209 220Right-handed alpha
Helix 31
AD4
B
251 263Right-handed alpha
Helix 32
AD5
B
279 283Right-handed 310
Helix 33
AD6
B
313 325Right-handed alpha
Helix 34
AD7
C
10 23Right-handed alpha
Helix 35
AD8
C
40 45Right-handed alpha
Helix 36
AD9
C
46 49Right-handed 310
Helix 37
AE1
C
60 68Right-handed alpha
Helix 38
AE2
C
78 89Right-handed alpha
Helix 39
AE3
C
119 126Right-handed alpha
Helix 40
AE4
C
134 140Right-handed alpha
Helix 41
AE5
C
148 164Right-handed alpha
Helix 42
AE6
C
180 184Right-handed 310
Helix 43
AE7
C
188 191Right-handed 310
Helix 44
AE8
C
192 197Right-handed alpha
Helix 45
AE9
C
209 219Right-handed alpha
Helix 46
AF1
C
220 222Right-handed 310
Helix 47
AF2
C
251 263Right-handed alpha
Helix 48
AF3
C
279 283Right-handed 310
Helix 49
AF4
C
313 325Right-handed alpha
Helix 50
AF5
D
10 22Right-handed alpha
Helix 51
AF6
D
40 45Right-handed alpha
Helix 52
AF7
D
46 49Right-handed 310
Helix 53
AF8
D
60 68Right-handed alpha
Helix 54
AF9
D
76 90Right-handed alpha
Helix 55
AG1
D
122 126Right-handed 310
Helix 56
AG2
D
134 139Right-handed alpha
Helix 57
AG3
D
148 164Right-handed alpha
Helix 58
AG4
D
180 184Right-handed 310
Helix 59
AG5
D
188 191Right-handed 310
Helix 60
AG6
D
192 197Right-handed alpha
Helix 61
AG7
D
209 218Right-handed alpha
Helix 62
AG8
D
219 222Right-handed 310
Helix 63
AG9
D
251 263Right-handed alpha
Helix 64
AH1
D
279 283Right-handed 310
Helix 65
AH2
D
313 325Right-handed alpha
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There are 9 sheets in PDB entry 8AFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
2 6parallel
Strand 3
A
70 73parallel
Strand 4
A
93 96parallel
Strand 5
A
143 145parallel
Strand 6
A
126 128parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
228 233anti-parallel
Strand 3
A
173 178parallel
Strand 4
A
240 247anti-parallel
Strand 5
A
299 306anti-parallel
Strand 6
A
289 296anti-parallel
Strand 7
A
269 272parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 32first strand
Strand 2
B
2 6parallel
Strand 3
B
70 73parallel
Strand 4
B
93 96parallel
Strand 5
B
143 145parallel
Strand 6
B
127 128parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 202first strand
Strand 2
B
228 233anti-parallel
Strand 3
B
173 178parallel
Strand 4
B
240 247anti-parallel
Strand 5
B
299 306anti-parallel
Strand 6
B
289 296anti-parallel
Strand 7
B
269 272parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 57first strand
Strand 2
C
27 32parallel
Strand 3
C
2 6parallel
Strand 4
C
70 73parallel
Strand 5
C
93 96parallel
Strand 6
C
143 145parallel
Strand 7
C
127 128parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
201 202first strand
Strand 2
C
228 233anti-parallel
Strand 3
C
173 178parallel
Strand 4
C
240 247anti-parallel
Strand 5
C
299 306anti-parallel
Strand 6
C
289 296anti-parallel
Strand 7
C
269 272parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 32first strand
Strand 2
D
2 6parallel
Strand 3
D
70 74parallel
Strand 4
D
93 97parallel
Strand 5
D
143 145parallel
Strand 6
D
127 128parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
228 230first strand
Strand 2
D
173 178parallel
Strand 3
D
240 247anti-parallel
Strand 4
D
299 306anti-parallel
Strand 5
D
289 296anti-parallel
Strand 6
D
269 272parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
201 202first strand
Strand 2
D
232 233anti-parallel
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