Analysis of interatomic Contacts of Structural Units in PDB entry:
8AFW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AFW entry

There are 4 chains in PDB entry 8AFW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 5	MET 499
B	SER 5	MET 499
C	SER 5	ASP 500
D	SER 5	MET 499

There are 3 helices in PDB entry 8AFW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	440	442	Right-handed 310
Helix 2	AA2	C	142	145	Right-handed 310
Helix 3	AA3	D	142	145	Right-handed 310

There are 32 sheets in PDB entry 8AFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	19	24	anti-parallel
Strand 3	A	28	32	anti-parallel
Strand 4	A	38	42	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	52	first strand
Strand 2	A	59	63	anti-parallel
Strand 3	A	76	79	anti-parallel
Strand 4	A	84	88	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	104	108	anti-parallel
Strand 3	A	112	117	anti-parallel
Strand 4	A	123	128	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	147	151	anti-parallel
Strand 3	A	225	231	anti-parallel
Strand 4	A	236	244	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	253	first strand
Strand 2	A	259	264	anti-parallel
Strand 3	A	269	274	anti-parallel
Strand 4	A	280	285	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	298	first strand
Strand 2	A	304	309	anti-parallel
Strand 3	A	313	318	anti-parallel
Strand 4	A	413	416	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	431	first strand
Strand 2	A	461	471	anti-parallel
Strand 3	A	435	438	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	431	first strand
Strand 2	A	461	471	anti-parallel
Strand 3	A	475	481	anti-parallel
Strand 4	A	490	496	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	19	24	anti-parallel
Strand 3	B	28	32	anti-parallel
Strand 4	B	38	42	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	58	63	anti-parallel
Strand 3	B	76	79	anti-parallel
Strand 4	B	84	88	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	104	108	anti-parallel
Strand 3	B	112	117	anti-parallel
Strand 4	B	123	128	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	139	first strand
Strand 2	B	147	151	anti-parallel
Strand 3	B	225	231	anti-parallel
Strand 4	B	236	244	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	253	first strand
Strand 2	B	259	264	anti-parallel
Strand 3	B	269	274	anti-parallel
Strand 4	B	280	285	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	298	first strand
Strand 2	B	304	309	anti-parallel
Strand 3	B	313	318	anti-parallel
Strand 4	B	413	416	anti-parallel
Strand 5	B	487	488	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	431	first strand
Strand 2	B	461	471	anti-parallel
Strand 3	B	435	438	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	431	first strand
Strand 2	B	461	471	anti-parallel
Strand 3	B	475	481	anti-parallel
Strand 4	B	490	496	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	13	first strand
Strand 2	C	19	24	anti-parallel
Strand 3	C	28	32	anti-parallel
Strand 4	C	38	42	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	52	first strand
Strand 2	C	59	63	anti-parallel
Strand 3	C	76	79	anti-parallel
Strand 4	C	84	88	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	100	first strand
Strand 2	C	104	108	anti-parallel
Strand 3	C	112	117	anti-parallel
Strand 4	C	123	128	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	139	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	225	231	anti-parallel
Strand 4	C	236	244	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	253	first strand
Strand 2	C	259	264	anti-parallel
Strand 3	C	269	274	anti-parallel
Strand 4	C	280	285	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	298	first strand
Strand 2	C	304	309	anti-parallel
Strand 3	C	313	318	anti-parallel
Strand 4	C	413	416	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	431	first strand
Strand 2	C	461	471	anti-parallel
Strand 3	C	435	438	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	431	first strand
Strand 2	C	461	471	anti-parallel
Strand 3	C	476	481	anti-parallel
Strand 4	C	490	494	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	13	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	28	32	anti-parallel
Strand 4	D	38	42	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	52	first strand
Strand 2	D	58	63	anti-parallel
Strand 3	D	76	79	anti-parallel
Strand 4	D	84	88	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	100	first strand
Strand 2	D	104	108	anti-parallel
Strand 3	D	112	117	anti-parallel
Strand 4	D	123	128	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	139	first strand
Strand 2	D	147	151	anti-parallel
Strand 3	D	225	231	anti-parallel
Strand 4	D	236	244	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	253	first strand
Strand 2	D	259	264	anti-parallel
Strand 3	D	269	274	anti-parallel
Strand 4	D	280	285	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	298	first strand
Strand 2	D	304	309	anti-parallel
Strand 3	D	313	318	anti-parallel
Strand 4	D	413	416	anti-parallel
Strand 5	D	487	488	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	427	431	first strand
Strand 2	D	461	471	anti-parallel
Strand 3	D	435	438	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	427	431	first strand
Strand 2	D	461	471	anti-parallel
Strand 3	D	475	481	anti-parallel
Strand 4	D	490	496	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AFW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AFW