Analysis of interatomic Contacts of Structural Units in PDB entry:
8AFZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AFZ entry

There are 3 chains in PDB entry 8AFZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 142SER 522
B
 PRO 29ASN 404
C
 SER 171PRO 200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8AFZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
157 161Right-handed 310
Helix 2
AA2
A
187 202Right-handed alpha
Helix 3
AA3
A
203 205Right-handed 310
Helix 4
AA4
A
215 224Right-handed alpha
Helix 5
AA5
A
228 252Right-handed alpha
Helix 6
AA6
A
252 257Right-handed alpha
Helix 7
AA7
A
275 300Right-handed alpha
Helix 8
AA8
A
306 358Right-handed alpha
Helix 9
AA9
A
360 391Right-handed alpha
Helix 10
AB1
A
392 440Right-handed alpha
Helix 11
AB2
A
442 520Right-handed alpha
Helix 12
AB3
B
69 82Right-handed alpha
Helix 13
AB4
B
83 86Right-handed 310
Helix 14
AB5
B
99 112Right-handed alpha
Helix 15
AB6
B
113 116Right-handed 310
Helix 16
AB7
B
117 152Right-handed alpha
Helix 17
AB8
B
155 158Right-handed 310
Helix 18
AB9
B
159 167Right-handed alpha
Helix 19
AC1
B
179 200Right-handed alpha
Helix 20
AC2
B
210 256Right-handed alpha
Helix 21
AC3
B
259 291Right-handed alpha
Helix 22
AC4
B
291 333Right-handed alpha
Helix 23
AC5
B
335 403Right-handed alpha
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There are 2 sheets in PDB entry 8AFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 155first strand
Strand 2
A
162 171anti-parallel
Strand 3
A
180 186anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 68first strand
Strand 2
B
44 53anti-parallel
Strand 3
B
31 41anti-parallel
Strand 4
C
173 178anti-parallel
Strand 5
C
193 198anti-parallel
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