Analysis of interatomic Contacts of Structural Units in PDB entry:
8AG0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AG0 entry

There are 2 chains in PDB entry 8AG0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 166
B
 MET 0GLU 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8AG0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 22Right-handed alpha
Helix 2
AA2
A
61 70Right-handed alpha
Helix 3
AA3
A
138 165Right-handed alpha
Helix 4
AA4
B
16 32Right-handed alpha
Helix 5
AA5
B
42 52Right-handed alpha
Helix 6
AA6
B
63 65Right-handed 310
Helix 7
AA7
B
66 73Right-handed alpha
Helix 8
AA8
B
82 87Right-handed alpha
Helix 9
AA9
B
90 97Right-handed alpha
Helix 10
AB1
B
128 130Right-handed 310
Helix 11
AB2
B
131 141Right-handed alpha
Helix 12
AB3
B
153 162Right-handed alpha
Helix 13
AB4
B
185 201Right-handed alpha
Helix 14
AB5
B
209 219Right-handed alpha
Helix 15
AB6
B
228 230Right-handed 310
Helix 16
AB7
B
231 236Right-handed alpha
Helix 17
AB8
B
272 283Right-handed alpha
Helix 18
AB9
B
286 297Right-handed alpha
Helix 19
AC1
B
304 312Right-handed alpha
Helix 20
AC2
B
314 327Right-handed alpha
Helix 21
AC3
B
335 353Right-handed alpha
Helix 22
AC4
B
356 370Right-handed alpha
Helix 23
AC5
B
374 376Right-handed 310
Helix 24
AC6
B
377 395Right-handed alpha
Helix 25
AC7
B
406 423Right-handed alpha
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There are 7 sheets in PDB entry 8AG0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 10first strand
Strand 2
A
122 132anti-parallel
Strand 3
A
104 114anti-parallel
Strand 4
A
90 97anti-parallel
Strand 5
A
76 85anti-parallel
Strand 6
A
49 57anti-parallel
Strand 7
A
33 43anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
7 10parallel
Strand 3
B
59 62parallel
Strand 4
B
258 266anti-parallel
Strand 5
B
106 111anti-parallel
Strand 6
B
301 302anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
7 10parallel
Strand 3
B
59 62parallel
Strand 4
B
258 266anti-parallel
Strand 5
B
328 329parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
102 103anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 147first strand
Strand 2
B
222 227parallel
Strand 3
B
114 118anti-parallel
Strand 4
B
242 245anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 172first strand
Strand 2
B
175 181anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 250first strand
Strand 2
B
253 254anti-parallel
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