Analysis of interatomic Contacts of Structural Units in PDB entry:
8AG3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AG3 entry

There are 2 chains in PDB entry 8AG3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1ASN 161
D
 MET 1ASN 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8AG3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
20 31Right-handed alpha
Helix 2
AA2
C
47 60Right-handed alpha
Helix 3
AA3
D
22 31Right-handed alpha
Helix 4
AA4
D
46 61Right-handed alpha
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There are 4 sheets in PDB entry 8AG3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 42first strand
Strand 2
C
72 78anti-parallel
Strand 3
C
149 160anti-parallel
Strand 4
C
98 108anti-parallel
Strand 5
C
131 134anti-parallel
Strand 6
C
10 14anti-parallel
Strand 7
C
2 4anti-parallel
Strand 8
D
3 4anti-parallel
Strand 9
D
10 15anti-parallel
Strand 10
D
130 134anti-parallel
Strand 11
D
98 108anti-parallel
Strand 12
D
149 160anti-parallel
Strand 13
D
73 78anti-parallel
Strand 14
D
38 41anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 69first strand
Strand 2
C
149 160anti-parallel
Strand 3
C
98 108anti-parallel
Strand 4
C
131 134anti-parallel
Strand 5
C
10 14anti-parallel
Strand 6
C
2 4anti-parallel
Strand 7
D
3 4anti-parallel
Strand 8
D
10 15anti-parallel
Strand 9
D
130 134anti-parallel
Strand 10
D
98 108anti-parallel
Strand 11
D
149 160anti-parallel
Strand 12
D
64 69anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 86first strand
Strand 2
C
138 141anti-parallel
Strand 3
C
116 119anti-parallel
Strand 4
C
124 127anti-parallel
Strand 5
D
124 127anti-parallel
Strand 6
D
116 118anti-parallel
Strand 7
D
139 141anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
112 113first strand
Strand 2
D
144 146anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il