Analysis of interatomic Contacts of Structural Units in PDB entry:
8AG4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AG4 entry

There are 4 chains in PDB entry 8AG4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 33	TYR 534
B	PRO -1	LYS 544
C	SER 159	LYS 331
D	ARG 162	LYS 331

There are 43 helices in PDB entry 8AG4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	50	Right-handed 310
Helix 2	AA2	A	58	78	Right-handed alpha
Helix 3	AA3	A	112	122	Right-handed alpha
Helix 4	AA4	A	123	135	Right-handed alpha
Helix 5	AA5	A	142	156	Right-handed alpha
Helix 6	AA6	A	179	197	Right-handed alpha
Helix 7	AA7	A	238	251	Right-handed alpha
Helix 8	AA8	A	330	337	Right-handed alpha
Helix 9	AA9	A	354	356	Right-handed 310
Helix 10	AB1	A	377	393	Right-handed alpha
Helix 11	AB2	A	439	443	Right-handed 310
Helix 12	AB3	A	455	469	Right-handed alpha
Helix 13	AB4	A	480	495	Right-handed alpha
Helix 14	AB5	A	510	519	Right-handed alpha
Helix 15	AB6	A	520	530	Right-handed alpha
Helix 16	AB7	B	29	49	Right-handed alpha
Helix 17	AB8	B	87	97	Right-handed alpha
Helix 18	AB9	B	106	122	Right-handed alpha
Helix 19	AC1	B	146	158	Right-handed alpha
Helix 20	AC2	B	198	216	Right-handed alpha
Helix 21	AC3	B	217	222	Right-handed 310
Helix 22	AC4	B	227	231	Right-handed alpha
Helix 23	AC5	B	234	238	Right-handed 310
Helix 24	AC6	B	285	287	Right-handed 310
Helix 25	AC7	B	306	310	Right-handed 310
Helix 26	AC8	B	324	326	Right-handed 310
Helix 27	AC9	B	349	351	Right-handed 310
Helix 28	AD1	B	352	356	Right-handed 310
Helix 29	AD2	B	370	388	Right-handed alpha
Helix 30	AD3	B	426	430	Right-handed 310
Helix 31	AD4	B	447	461	Right-handed alpha
Helix 32	AD5	B	466	470	Right-handed 310
Helix 33	AD6	B	478	482	Right-handed 310
Helix 34	AD7	B	484	500	Right-handed alpha
Helix 35	AD8	B	509	516	Right-handed alpha
Helix 36	AD9	B	519	537	Right-handed alpha
Helix 37	AE1	C	225	229	Right-handed 310
Helix 38	AE2	C	234	243	Right-handed alpha
Helix 39	AE3	C	246	251	Right-handed alpha
Helix 40	AE4	C	282	298	Right-handed alpha
Helix 41	AE5	D	223	229	Right-handed 310
Helix 42	AE6	D	234	243	Right-handed alpha
Helix 43	AE7	D	281	299	Right-handed alpha

There are 14 sheets in PDB entry 8AG4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	109	first strand
Strand 2	A	82	88	anti-parallel
Strand 3	A	37	43	parallel
Strand 4	A	164	169	parallel
Strand 5	A	198	202	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	262	first strand
Strand 2	A	268	274	anti-parallel
Strand 3	A	366	370	anti-parallel
Strand 4	A	431	436	anti-parallel
Strand 5	A	409	416	anti-parallel
Strand 6	A	394	401	anti-parallel
Strand 7	A	344	352	anti-parallel
Strand 8	A	260	262	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	304	first strand
Strand 2	B	289	293	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	329	first strand
Strand 2	A	316	322	anti-parallel
Strand 3	B	277	280	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	376	first strand
Strand 2	B	540	541	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	420	first strand
Strand 2	A	426	428	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	84	first strand
Strand 2	B	53	59	anti-parallel
Strand 3	B	8	15	parallel
Strand 4	B	129	135	parallel
Strand 5	B	159	165	parallel
Strand 6	B	224	226	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	252	first strand
Strand 2	B	258	267	anti-parallel
Strand 3	B	357	366	anti-parallel
Strand 4	B	417	424	anti-parallel
Strand 5	B	404	412	anti-parallel
Strand 6	B	389	396	anti-parallel
Strand 7	B	339	347	anti-parallel
Strand 8	B	247	252	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	315	first strand
Strand 2	B	320	322	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	465	first strand
Strand 2	B	474	475	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	168	first strand
Strand 2	C	174	177	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	232	first strand
Strand 2	C	214	218	anti-parallel
Strand 3	C	203	208	anti-parallel
Strand 4	C	186	193	anti-parallel
Strand 5	C	316	327	anti-parallel
Strand 6	C	304	310	anti-parallel
Strand 7	C	255	256	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	168	first strand
Strand 2	D	174	177	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	232	first strand
Strand 2	D	214	218	anti-parallel
Strand 3	D	203	208	anti-parallel
Strand 4	D	186	193	anti-parallel
Strand 5	D	316	327	anti-parallel
Strand 6	D	304	310	anti-parallel
Strand 7	D	255	256	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AG4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AG4