Analysis of interatomic Contacts of Structural Units in PDB entry:
8AG6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AG6 entry

There are 4 chains in PDB entry 8AG6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2THR 934
B
 SER 359LEU 1360
E
 G 11 C 35
F
 G 16 C 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 8AG6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
47 57Right-handed alpha
Helix 3
AA3
A
81 95Right-handed alpha
Helix 4
AA4
A
184 195Right-handed alpha
Helix 5
AA5
A
210 220Right-handed alpha
Helix 6
AA6
A
236 245Right-handed alpha
Helix 7
AA7
A
254 262Right-handed 310
Helix 8
AA8
A
263 278Right-handed alpha
Helix 9
AA9
A
303 310Right-handed alpha
Helix 10
AB1
A
325 331Right-handed alpha
Helix 11
AB2
A
335 348Right-handed alpha
Helix 12
AB3
A
352 369Right-handed alpha
Helix 13
AB4
A
369 379Right-handed alpha
Helix 14
AB5
A
380 384Right-handed 310
Helix 15
AB6
A
386 396Right-handed alpha
Helix 16
AB7
A
400 423Right-handed alpha
Helix 17
AB8
A
428 436Right-handed alpha
Helix 18
AB9
A
436 458Right-handed alpha
Helix 19
AC1
A
461 466Right-handed 310
Helix 20
AC2
A
471 474Right-handed 310
Helix 21
AC3
A
475 504Right-handed alpha
Helix 22
AC4
A
527 533Right-handed 310
Helix 23
AC5
A
554 587Right-handed alpha
Helix 24
AC6
A
588 614Right-handed alpha
Helix 25
AC7
A
639 644Right-handed alpha
Helix 26
AC8
A
674 692Right-handed alpha
Helix 27
AC9
A
723 739Right-handed alpha
Helix 28
AD1
A
755 774Right-handed alpha
Helix 29
AD2
A
784 793Right-handed 310
Helix 30
AD3
A
826 834Right-handed alpha
Helix 31
AD4
A
837 853Right-handed alpha
Helix 32
AD5
A
874 894Right-handed alpha
Helix 33
AD6
A
902 918Right-handed alpha
Helix 34
AD7
A
920 931Right-handed alpha
Helix 35
AD8
B
365 370Right-handed 310
Helix 36
AD9
B
399 406Right-handed alpha
Helix 37
AE1
B
407 420Right-handed alpha
Helix 38
AE2
B
437 448Right-handed alpha
Helix 39
AE3
B
465 476Right-handed alpha
Helix 40
AE4
B
488 499Right-handed alpha
Helix 41
AE5
B
518 522Right-handed 310
Helix 42
AE6
B
579 589Right-handed alpha
Helix 43
AE7
B
602 613Right-handed alpha
Helix 44
AE8
B
629 640Right-handed alpha
Helix 45
AE9
B
656 662Right-handed alpha
Helix 46
AF1
B
677 694Right-handed alpha
Helix 47
AF2
B
696 702Right-handed alpha
Helix 48
AF3
B
736 744Right-handed alpha
Helix 49
AF4
B
757 763Right-handed alpha
Helix 50
AF5
B
767 780Right-handed alpha
Helix 51
AF6
B
784 799Right-handed alpha
Helix 52
AF7
B
801 813Right-handed alpha
Helix 53
AF8
B
817 829Right-handed alpha
Helix 54
AF9
B
830 837Right-handed alpha
Helix 55
AG1
B
837 842Right-handed alpha
Helix 56
AG2
B
846 876Right-handed alpha
Helix 57
AG3
B
877 882Right-handed 310
Helix 58
AG4
B
884 892Right-handed alpha
Helix 59
AG5
B
905 914Right-handed alpha
Helix 60
AG6
B
917 925Right-handed alpha
Helix 61
AG7
B
934 963Right-handed alpha
Helix 62
AG8
B
1008 1041Right-handed alpha
Helix 63
AG9
B
1043 1068Right-handed alpha
Helix 64
AH1
B
1139 1157Right-handed alpha
Helix 65
AH2
B
1189 1204Right-handed alpha
Helix 66
AH3
B
1220 1238Right-handed alpha
Helix 67
AH4
B
1249 1256Right-handed alpha
Helix 68
AH5
B
1297 1306Right-handed alpha
Helix 69
AH6
B
1309 1343Right-handed alpha
Helix 70
AH7
B
1347 1360Right-handed alpha
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There are 10 sheets in PDB entry 8AG6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
43 46anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
99 105parallel
Strand 6
A
117 123anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 226first strand
Strand 2
A
198 201parallel
Strand 3
A
145 152parallel
Strand 4
A
160 167anti-parallel
Strand 5
A
172 179anti-parallel
Strand 6
A
290 293parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 302first strand
Strand 2
A
707 711parallel
Strand 3
A
744 748parallel
Strand 4
A
777 781parallel
Strand 5
A
664 668parallel
Strand 6
A
797 807parallel
Strand 7
A
810 819anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 516first strand
Strand 2
A
520 525anti-parallel
Strand 3
A
548 553anti-parallel
Strand 4
A
539 545anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 625first strand
Strand 2
A
699 703parallel
Strand 3
A
631 637anti-parallel
Strand 4
A
653 658anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 462first strand
Strand 2
B
432 436anti-parallel
Strand 3
B
424 429anti-parallel
Strand 4
B
480 485parallel
Strand 5
B
511 517anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
617 621first strand
Strand 2
B
591 597parallel
Strand 3
B
538 546parallel
Strand 4
B
554 561anti-parallel
Strand 5
B
567 575anti-parallel
Strand 6
B
705 708parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
734 735first strand
Strand 2
B
1172 1176parallel
Strand 3
B
1209 1213parallel
Strand 4
B
1242 1246parallel
Strand 5
B
1129 1132parallel
Strand 6
B
1262 1272parallel
Strand 7
B
1282 1291anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
968 972first strand
Strand 2
B
975 982anti-parallel
Strand 3
B
1003 1007anti-parallel
Strand 4
B
995 1000anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1078 1079first strand
Strand 2
B
1164 1167parallel
Strand 3
B
1089 1094anti-parallel
Strand 4
B
1111 1115anti-parallel
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