Analysis of interatomic Contacts of Structural Units in PDB entry:
8AGC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AGC entry

There are 10 chains in PDB entry 8AGC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	VAL 718
B	MET 1	SER 33
C	THR 2	VAL 86
D	ASP 22	ASN 130
E	TYR 25	VAL 474
F	HIS 25	GLY 282
G	ARG 25	SER 418
H	ILE 213	LEU 343
P	TYR 2	ALA 3
P	ALA 5	ALA 8

There are 69 helices in PDB entry 8AGC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	33	Right-handed alpha
Helix 2	AA2	A	33	39	Right-handed alpha
Helix 3	AA3	A	46	61	Right-handed alpha
Helix 4	AA4	A	62	68	Right-handed alpha
Helix 5	AA5	A	83	85	Right-handed 310
Helix 6	AA6	A	88	104	Right-handed alpha
Helix 7	AA7	A	110	117	Right-handed alpha
Helix 8	AA8	A	117	136	Right-handed alpha
Helix 9	AA9	A	139	153	Right-handed alpha
Helix 10	AB1	A	153	159	Right-handed alpha
Helix 11	AB2	A	167	189	Right-handed alpha
Helix 12	AB3	A	190	208	Right-handed alpha
Helix 13	AB4	A	211	228	Right-handed alpha
Helix 14	AB5	A	232	251	Right-handed alpha
Helix 15	AB6	A	258	263	Right-handed alpha
Helix 16	AB7	A	266	288	Right-handed alpha
Helix 17	AB8	A	293	320	Right-handed alpha
Helix 18	AB9	A	336	341	Right-handed alpha
Helix 19	AC1	A	348	352	Right-handed 310
Helix 20	AC2	A	357	362	Right-handed alpha
Helix 21	AC3	A	365	380	Right-handed alpha
Helix 22	AC4	A	382	402	Right-handed alpha
Helix 23	AC5	A	403	407	Right-handed 310
Helix 24	AC6	A	408	429	Right-handed alpha
Helix 25	AC7	A	442	473	Right-handed alpha
Helix 26	AC8	A	494	506	Right-handed alpha
Helix 27	AC9	A	516	518	Right-handed 310
Helix 28	AD1	A	519	527	Right-handed alpha
Helix 29	AD2	A	539	551	Right-handed alpha
Helix 30	AD3	A	553	564	Right-handed alpha
Helix 31	AD4	A	582	585	Right-handed 310
Helix 32	AD5	A	586	598	Right-handed alpha
Helix 33	AD6	A	603	607	Right-handed 310
Helix 34	AD7	A	621	626	Right-handed alpha
Helix 35	AD8	A	627	634	Right-handed alpha
Helix 36	AD9	A	691	701	Right-handed alpha
Helix 37	AE1	B	3	33	Right-handed alpha
Helix 38	AE2	C	3	12	Right-handed alpha
Helix 39	AE3	C	21	23	Right-handed 310
Helix 40	AE4	C	24	45	Right-handed alpha
Helix 41	AE5	C	52	82	Right-handed alpha
Helix 42	AE6	D	23	41	Right-handed alpha
Helix 43	AE7	D	42	69	Right-handed alpha
Helix 44	AE8	D	73	100	Right-handed alpha
Helix 45	AE9	D	108	129	Right-handed alpha
Helix 46	AF1	E	71	77	Right-handed alpha
Helix 47	AF2	E	269	279	Right-handed alpha
Helix 48	AF3	E	442	447	Right-handed alpha
Helix 49	AF4	E	447	469	Right-handed alpha
Helix 50	AF5	F	118	128	Right-handed alpha
Helix 51	AF6	F	191	215	Right-handed alpha
Helix 52	AF7	F	228	252	Right-handed alpha
Helix 53	AF8	F	255	281	Right-handed alpha
Helix 54	AF9	G	37	39	Right-handed 310
Helix 55	AG1	G	40	50	Right-handed alpha
Helix 56	AG2	G	89	94	Right-handed alpha
Helix 57	AG3	G	95	105	Right-handed alpha
Helix 58	AG4	G	119	129	Right-handed alpha
Helix 59	AG5	G	156	158	Right-handed 310
Helix 60	AG6	G	239	243	Right-handed 310
Helix 61	AG7	G	247	258	Right-handed alpha
Helix 62	AG8	G	379	383	Right-handed 310
Helix 63	AG9	G	385	388	Right-handed 310
Helix 64	AH1	G	389	416	Right-handed alpha
Helix 65	AH2	H	216	233	Right-handed alpha
Helix 66	AH3	H	236	241	Right-handed alpha
Helix 67	AH4	H	266	290	Right-handed alpha
Helix 68	AH5	H	290	299	Right-handed alpha
Helix 69	AH6	H	305	335	Right-handed alpha

There are 20 sheets in PDB entry 8AGC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	80	81	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	531	first strand
Strand 2	A	512	514	parallel
Strand 3	A	568	572	parallel
Strand 4	A	677	682	anti-parallel
Strand 5	A	666	671	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	647	first strand
Strand 2	A	654	655	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	E	349	351	anti-parallel
Strand 3	E	358	364	anti-parallel
Strand 4	E	434	440	anti-parallel
Strand 5	E	388	393	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	85	first strand
Strand 2	E	128	137	anti-parallel
Strand 3	E	47	56	anti-parallel
Strand 4	E	32	41	anti-parallel
Strand 5	E	173	178	parallel
Strand 6	E	203	204	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	70	first strand
Strand 2	E	113	123	anti-parallel
Strand 3	E	93	97	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	143	first strand
Strand 2	E	154	160	anti-parallel
Strand 3	E	220	226	anti-parallel
Strand 4	E	183	186	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	148	first strand
Strand 2	E	263	264	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	309	310	first strand
Strand 2	E	300	306	anti-parallel
Strand 3	E	334	344	anti-parallel
Strand 4	E	248	259	anti-parallel
Strand 5	E	231	243	anti-parallel
Strand 6	E	377	383	parallel
Strand 7	E	416	423	anti-parallel
Strand 8	E	400	406	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	309	310	first strand
Strand 2	E	300	306	anti-parallel
Strand 3	E	334	344	anti-parallel
Strand 4	E	248	259	anti-parallel
Strand 5	E	231	243	anti-parallel
Strand 6	E	373	374	parallel
Strand 7	E	426	427	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	291	294	first strand
Strand 2	E	320	323	anti-parallel
Strand 3	E	314	316	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	69	first strand
Strand 2	F	26	32	anti-parallel
Strand 3	F	105	111	parallel
Strand 4	F	99	101	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	95	first strand
Strand 2	F	79	85	anti-parallel
Strand 3	F	132	139	anti-parallel
Strand 4	F	149	156	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	58	first strand
Strand 2	G	26	30	parallel
Strand 3	G	78	81	parallel
Strand 4	G	108	112	parallel
Strand 5	G	228	232	parallel
Strand 6	G	218	222	anti-parallel
Strand 7	G	188	190	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	131	133	first strand
Strand 2	G	180	182	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	138	141	first strand
Strand 2	G	199	202	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	152	154	first strand
Strand 2	G	171	173	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	263	273	first strand
Strand 2	G	289	299	anti-parallel
Strand 3	G	304	306	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	263	273	first strand
Strand 2	G	289	299	anti-parallel
Strand 3	G	337	345	anti-parallel
Strand 4	G	328	332	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	321	326	first strand
Strand 2	G	313	317	anti-parallel
Strand 3	G	351	359	anti-parallel
Strand 4	G	367	375	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AGC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AGC